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Report for CCDS85098.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85098.1 Public Mus musculus 6 Magi1 23 108 98 CCDS HistoryNCBI Gene:14924Re-query CCDS DB by CCDS ID:85098.1Re-query CCDS DB by GeneID:14924See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85098.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000203688.2 ENSMUSP00000145515.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203688.2Link to Ensembl Protein Viewer:ENSMUSP00000145515.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203688Re-query CCDS DB by Protein ID:ENSMUSP00000145515
Original member NCBI NM_001083321.2 NP_001076790.1 Updated not alive Link to Nucleotide Sequence:NM_001083321.2Link to Protein Sequence:NP_001076790.1Re-query CCDS DB by Nucleotide ID:NM_001083321Re-query CCDS DB by Protein ID:NP_001076790
Current member NCBI NM_001083321.3 NP_001076790.1 Accepted alive Link to Nucleotide Sequence:NM_001083321.3Link to Protein Sequence:NP_001076790.1Re-query CCDS DB by Nucleotide ID:NM_001083321Re-query CCDS DB by Protein ID:NP_001076790Link to BLAST:NP_001076790.1

Chromosomal Locations for CCDS 85098.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 93682902 93683090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93685554 93685697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93686577 93686637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93686782 93686875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93694008 93694208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93697194 93697487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93699616 93699808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93701290 93701381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93704277 93704360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93708004 93708220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93717240 93717271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93745434 93746054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93747192 93747374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93755014 93755106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93757655 93757764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93760708 93760765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93769508 93769543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93773607 93773689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93785445 93785646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 93792347 93792422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3063 nt):
ATGCAAAATGCTGGCATAGTCCACCCGGAGAATGAGGAGGAGGAGGATGTCCCTGAAATGAACAGTAGCT
TTACAGCCGACTCTGGAGACCAGGACGAGCACACTCTCCAAGAAGCAACGCTCCCGCCTGTGAATAGTAG
CATCCTCGCTGCTCCCATCACGGACCCTTCTCAGAAGTTCCCTCAGTACCTACCTCTTTCTGCAGAGGAT
AATTTAGGTCCTCTACCTGAAAACTGGGAGATGGCCTATACTGAAAATGGAGAAGTCTATTTCATAGACC
ACAACACGAAAACAACATCATGGTTAGACCCTCGGTGCCTGAACAAACAGCAGAAGCCTCTGGAAGAATG
TGAAGATGATGAAGGGGTACACACCGAGGAGCTGGACAGTGAACTAGAGTTGCCTGCTGGCTGGGAAAAG
ATTGAAGACCCTGTCTACGGTGTCTACTATGTAGACCACATCAACAGGAAGACGCAATATGAAAACCCAG
TCCTAGAAGCCAAACGGAAGAAACAGCTTGAACAGCAGCAGCAACAGCAGCAGCCTCAGCCACCGCAGCC
AGAAGAGTGGACAGAGGATCATGCATCTGTTGTGCCTCCTGTTGCTCCTTCCCATCCCCCGAGCAATCCG
GAGCCAGCCAGGGAAACTCCACTTCAGGGCAAACCTTTTTTTACAAGAAACCCCTCTGAGCTGAAAGGCA
AGTTCATTCACACGAAGCTACGGAAAAGCAGCCGAGGCTTTGGCTTCACGGTGGTTGGAGGAGACGAGCC
TGATGAGTTCCTGCAGATCAAGAGCCTCGTCCTCGATGGTCCTGCCGCACTGGATGGCAAGATGGAGACA
GGGGATGTAATTGTGAGTGTGAATGACACCTGTGTTTTGGGACACACACATGCTCAAGTTGTGAAAATCT
TCCAGTCCATTCCCATTGGTGCCAGTGTGGACCTTGAACTCTGCAGAGGTTATCCATTGCCTTTTGACCC
GGATGACCCTAATACAAGTTTAGTGACCTCGGTGGCCATTTTGGACAAAGAACCAATTATTGTAAATGGA
CAAGAGACCTACGATTCACCAGCGAGCCACAGTAGTAAAACAGGCAAAGTCAGCAGCATGAAGGATGCCA
GGCCAAGCAGCCCTGCTGATGTGGCTTCCAACAGCTCTCATGGTTATCCCAACGACACAGTCTCCTTGGC
TTCCTCCATAGCCACCCAGCCAGAGCTAATAACTGTTCACATAGTCAAAGGGCCAATGGGATTTGGCTTT
ACGATCGCAGACAGTCCCGGTGGGGGTGGCCAAAGAGTGAAACAGATTGTTGACAGTCCACGCTGCAGAG
GCCTCAAAGAAGGGGATCTTATCGTGGAGGTGAATAAGAAGAACGTGCAGGCCCTGACGCACAATCAAGT
CGTGGATATGCTGATTGAATGTCCCAAGGGAAGTGAGGTCACACTGTTGGTGCAGCGAGGAGGGCTACCA
GTTCCCAAGAAGAGCCCAAAGTCGCAGCCACTGGAGAGGAAAGACAGCCAGAATAGCTCCCAGCACAGCG
TCTCCAGCCACCGGAGCCTGCACACTGCGTCCCCGAGCCACGGCATACAGGTGCTCCCTGAGTACCTACC
TGCAGACGCCCCTGCTCCAGATCAGACCGACAGCTCTGGGCAGAAAAAGCCAGATCCTTTTAAAATCTGG
GCCCAGTCCAGGAGCATGTATGAAAACCGACCTATGTCACCTTCGCCTGCATCAGGATTGAGCAAGGGTG
AAAGAGACAGAGAAATCAATTCCACGAATTTTGGAGAATGTCAGATTCCAGATTACCAGGAACAGGACAT
CTTCCTCTGGAGAAAAGAAACCGGATTTGGATTTAGGATTCTGGGTGGAAATGAACCAGGGGAACCCATT
TATATCGGTCACATCGTACCGCTGGGTGCTGCTGACACAGACGGCCGCCTGAGGTCTGGAGATGAATTAA
TCTGTGTGGATGGGACACCAGTAATTGGGAAATCACACCAGCTCGTGGTCCAGCTTATGCAACAAGCTGC
CAAGCAAGGCCATGTCAATCTCACAGTGAGGCGGAAAGTGGTCTTTGCCGTCCCCAAAGCAGAGAATGAG
GTGCCCTCACCAGCCTCATCACACCACAGTAGCAACCAGCCCGCGTCCCTGACGGAGGAGAAACGCACAC
CGCAAGGCAGCCAGAACTCTCTGAACACTGTGAGCTCTGGCAGCGGCAGCACCAGTGGCATTGGCAGTGG
TGGCGGCGGGGGCAGCGGTGTGGTGAGCGCTGTGCTGCAGCCCTATGATGTGGAGATTCGGCGTGGGGAG
AACGAGGGCTTTGGGTTTGTCATCGTGTCCTCCGTGAGCAGACCCGAAGCGGGCACAACCTTCGGCAATG
CATGTGTGGCTATGCCTCACAAAATAGGTCGGATTATTGAGGGGAGCCCTGCTGACCGCTGTGGCAAGCT
GAAAGTAGGAGACCGGATCTTGGCAGTAAATGGATGTTCCATCACCAACAAATCCCATTCTGACATTGTC
AACCTAATCAAAGAAGCGGGCAACACAGTGACTCTCCGCATCATCCCCGGGGATGAGTCCTCAAATGCCA
CGCTGCTGACTAATGCTGAGAAGATTGCCACCATCACCACCACTCATGCCCCCTCTCAGCAGGGGACCCA
GGAAACAAGGACCACCACCAAACCAAAGCAGGATTCTCAGTTTGAGTTCAAAGGACCGCAGGCTGCACAG
GAGCAAGATTTCTACACTGTGGAATTGGAAAGAGGGGCCAAGGGATTTGGCTTTAGTCTTCGAGGGGGCC
GAGAATATAACATGGATCTTTATGTTCTGCGCTTGGCAGAGGATGGTCCTGCAGAAAGATGTGGGAAGAT
GAGGATTGGCGATGAAATTCTAGAGATCAATGGTGAGACCACCAAAAACATGAAACACTCTCGGGCCATA
GAACTGATCAAGAATGGCGGCCGCAGGGTCCGTCTGTTTCTGCGGCGGGGAGACGGCTCAGTCCCAGAAT
ATGGTGGGTCAAACTATGAAAACATCCCTTCCTTCCCTGGCATGACTCCATGA

Translation (1020 aa):
MQNAGIVHPENEEEEDVPEMNSSFTADSGDQDEHTLQEATLPPVNSSILAAPITDPSQKFPQYLPLSAED
NLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCLNKQQKPLEECEDDEGVHTEELDSELELPAGWEK
IEDPVYGVYYVDHINRKTQYENPVLEAKRKKQLEQQQQQQQPQPPQPEEWTEDHASVVPPVAPSHPPSNP
EPARETPLQGKPFFTRNPSELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMET
GDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGYPLPFDPDDPNTSLVTSVAILDKEPIIVNG
QETYDSPASHSSKTGKVSSMKDARPSSPADVASNSSHGYPNDTVSLASSIATQPELITVHIVKGPMGFGF
TIADSPGGGGQRVKQIVDSPRCRGLKEGDLIVEVNKKNVQALTHNQVVDMLIECPKGSEVTLLVQRGGLP
VPKKSPKSQPLERKDSQNSSQHSVSSHRSLHTASPSHGIQVLPEYLPADAPAPDQTDSSGQKKPDPFKIW
AQSRSMYENRPMSPSPASGLSKGERDREINSTNFGECQIPDYQEQDIFLWRKETGFGFRILGGNEPGEPI
YIGHIVPLGAADTDGRLRSGDELICVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRRKVVFAVPKAENE
VPSPASSHHSSNQPASLTEEKRTPQGSQNSLNTVSSGSGSTSGIGSGGGGGSGVVSAVLQPYDVEIRRGE
NEGFGFVIVSSVSRPEAGTTFGNACVAMPHKIGRIIEGSPADRCGKLKVGDRILAVNGCSITNKSHSDIV
NLIKEAGNTVTLRIIPGDESSNATLLTNAEKIATITTTHAPSQQGTQETRTTTKPKQDSQFEFKGPQAAQ
EQDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERCGKMRIGDEILEINGETTKNMKHSRAI
ELIKNGGRRVRLFLRRGDGSVPEYGGSNYENIPSFPGMTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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