NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17530.1 Public Mus musculus 3 Ilf2 23 108 98 CCDS HistoryNCBI Gene:67781Re-query CCDS DB by CCDS ID:17530.1Re-query CCDS DB by GeneID:67781See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17530.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001042.9 ENSMUSP00000001042.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001042.9Link to Ensembl Protein Viewer:ENSMUSP00000001042.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000001042Re-query CCDS DB by Protein ID:ENSMUSP00000001042
Original member Current member NCBI NM_026374.3 NP_080650.1 Accepted alive Link to Nucleotide Sequence:NM_026374.3Link to Protein Sequence:NP_080650.1Re-query CCDS DB by Nucleotide ID:NM_026374Re-query CCDS DB by Protein ID:NP_080650Link to BLAST:NP_080650.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080650.1 390 Q9CXY6 390 100% 0 0

Chromosomal Locations for CCDS 17530.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 90476241 90476245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90477005 90477064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90477320 90477362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90480604 90480708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90480993 90481070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90481364 90481466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90482777 90482842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90484454 90484570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90485690 90485768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90486185 90486272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90486851 90486912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90486983 90487097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90487227 90487317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 90487459 90487619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGAGGGGTGACAGAGGACGTGGTCGTGGTGGGCGCTTTGGTTCCAGAGGAGGGCCTGGTGGAGGGTTCA
GGCCTTTTGTGCCCCATATCCCATTTGATTTTTATTTGTGTGAAATGGCTTTTCCCCGGGTCAAGCCAGC
ACCTGATGAGACCTCCTTCAGTGAAGCCTTGCTGAAGAGGAATCAAGACCTTGCCCCTAATTCTGCTGAG
CAGGCTTCCATCCTTTCTTTGGTGACAAAAATCAACAATGTGATTGACAACTTGATTGTGGCCCCAGGAA
CATTTGAAGTGCAAATTGAAGAAGTCCGGCAGGTAGGATCATATAAAAAGGGAACAATGACTACAGGACA
CAATGTGGCTGACCTGGTGGTAATACTAAAGATCCTGCCAACATTGGAAGCTGTTGCTGCCCTGGGGAAC
AAAGTCGTGGAAAGCCTAAGGGCACAGGATCCCTCAGAAGTTTTGACCATGCTGACTAATGAAACTGGCT
TTGAAATTAGCTCTTCTGATGCTACGGTGAAAATTCTCATTACAACAGTGCCCCCCAATCTCCGAAAACT
GGATCCAGAACTCCATTTGGACATCAAGGTGTTGCAGAGCGCCTTAGCAGCCATCCGGCATGCCCGCTGG
TTTGAAGAGAACGCTTCTCAGTCCACAGTTAAAGTTCTCATAAGATTGCTAAAGGACTTACGGATTCGTT
TTCCTGGCTTTGAGCCTCTCACACCCTGGATCCTTGACCTACTTGGGCACTATGCTGTAATGAACAACCC
CACCAGACAGCCTTTGGCCCTGAATGTGGCTTACAGGCGCTGCTTGCAGATTCTGGCTGCAGGACTGTTC
TTGCCTGGGTCAGTGGGCATCACTGACCCGTGTGAGAGTGGCAACTTCAGGGTACACACAGTTATGACCC
TAGAACAACAGGATATGGTCTGCTACACAGCTCAGACTCTGGTTCGAATTCTCTCCCATGGAGGCTTTAG
GAAGATCCTTGGCCAGGAGGGGGATGCCAGCTATCTTGCTTCTGAAATATCTACCTGGGATGGAGTGATT
GTGACACCCTCAGAAAAGGCTTATGAGAAGCCACCTGAGAAGAAGGAGGGGGAGGAAGAGGAGGAGAACA
CAGAAGAACCACCTCAAGGAGAAGAAGAAGAAAGCATGGAGACTCAGGAGTGA

Translation (390 aa):
MRGDRGRGRGGRFGSRGGPGGGFRPFVPHIPFDFYLCEMAFPRVKPAPDETSFSEALLKRNQDLAPNSAE
QASILSLVTKINNVIDNLIVAPGTFEVQIEEVRQVGSYKKGTMTTGHNVADLVVILKILPTLEAVAALGN
KVVESLRAQDPSEVLTMLTNETGFEISSSDATVKILITTVPPNLRKLDPELHLDIKVLQSALAAIRHARW
FEENASQSTVKVLIRLLKDLRIRFPGFEPLTPWILDLLGHYAVMNNPTRQPLALNVAYRRCLQILAAGLF
LPGSVGITDPCESGNFRVHTVMTLEQQDMVCYTAQTLVRILSHGGFRKILGQEGDASYLASEISTWDGVI
VTPSEKAYEKPPEKKEGEEEEENTEEPPQGEEEESMETQE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH