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Report for CCDS38650.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38650.1 Public Mus musculus 3 Mttp 23 108 98 CCDS HistoryNCBI Gene:17777Re-query CCDS DB by CCDS ID:38650.1Re-query CCDS DB by GeneID:17777See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38650.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029805.12 ENSMUSP00000029805.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029805.12Link to Ensembl Protein Viewer:ENSMUSP00000029805.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029805Re-query CCDS DB by Protein ID:ENSMUSP00000029805
Original member Current member NCBI NM_001355051.1 NP_001341980.1 Accepted alive Link to Nucleotide Sequence:NM_001355051.1Link to Protein Sequence:NP_001341980.1Re-query CCDS DB by Nucleotide ID:NM_001355051Re-query CCDS DB by Protein ID:NP_001341980Link to BLAST:NP_001341980.1
Original member Current member NCBI NM_001355052.1 NP_001341981.1 Accepted alive Link to Nucleotide Sequence:NM_001355052.1Link to Protein Sequence:NP_001341981.1Re-query CCDS DB by Nucleotide ID:NM_001355052Re-query CCDS DB by Protein ID:NP_001341981Link to BLAST:NP_001341981.1
Original member Current member NCBI NM_008642.3 NP_032668.2 Accepted alive Link to Nucleotide Sequence:NM_008642.3Link to Protein Sequence:NP_032668.2Re-query CCDS DB by Nucleotide ID:NM_008642Re-query CCDS DB by Protein ID:NP_032668Link to BLAST:NP_032668.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341980.1 894 O08601-1 894 100% 0 0
NP_001341981.1 894 O08601-1 894 100% 0 0
NP_032668.2 894 O08601-1 894 100% 0 0

Chromosomal Locations for CCDS 38650.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138091055 138091229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138092579 138092749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138094959 138095083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138103087 138103314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138104667 138104788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138104943 138105040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138107102 138107310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138108956 138109168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138111644 138111751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138112460 138112628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138114056 138114213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138115136 138115286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138116002 138116141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138116407 138116523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138118313 138118420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138123733 138123876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138125058 138125245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138131240 138131300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2685 nt):
ATGATCCTCTTGGCAGTGCTTTTTCTCTGCTTCTTCTCCTCCTACTCTGCTTCCGTTAAAGGTCACACAA
CTGGCCTCTCATTAAATAATGAGCGGCTATACAAGCTCACGTACTCCACTGAAGTGTTTCTTGATGGGGG
CAAAGGAAAACCGCAAGACAGCGTGGGCTACAAAATCTCATCTGATGTGGACGTTGTGTTACTGTGGAGG
AATCCTGATGGTGATGATGATCAAGTGATCCAAGTCACGATAACAGCTGTTAACGTTGAAAATGCGGGTC
AACAGAGAGGCGAGAAGAGCATCTTCCAGGGCAAAAGTACACCTAAGATCATAGGGAAGGACAACCTGGA
GGCTCTGCAGAGACCCATGCTTCTTCATCTGGTCCGGGGGAAGGTCAAGGAGTTCTACTCCTATGAAAAC
GAGCCAGTGGGCATAGAAAATCTCAAGAGAGGCTTGGCTAGCTTATTCCAGATGCAGCTAAGCTCTGGAA
CTACCAACGAGGTAGATATCTCTGGGGATTGTAAAGTGACCTACCAGGCCCAGCAAGACAAAGTGGTCAA
AATTAAGGCTCTGGATACATGCAAAATTGAGCGGTCTGGATTTACAACGGCAAACCAGGTGCTGGGTGTC
AGTTCAAAAGCCACATCTGTCACTACCTACAAGATAGAGGACAGCTTTGTCACCGCTGTGCTTGCAGAAG
AGACCAGGGCTTTTGCCTTGAACTTCCAACAAACCATAGCAGGAAAAATAGTGTCGAAGCAGAAATTGGA
GCTGAAGACAACTGAAGCCGGCCCAAGGATGATCCCCGGGAAGCAAGTGGCAGGTGTAATTAAAGCAGTT
GATTCCAAATACAAAGCCATTCCCATTGTGGGACAGGTCCTCGAGCGTGTCTGCAAAGGATGCCCTTCTC
TGGCGGAGCACTGGAAGTCCATCAGAAAGAACCTGGAGCCTGAAAACCTGTCCAAGGCCGAGGCCGTCCA
GAGCTTCCTGGCCTTCATTCAGCACCTCCGGACTTCGAGGAGAGAAGAGATCCTCCAGATTCTGAAGGCA
GAGAAGAAAGAAGTGCTCCCTCAGCTGGTGGATGCCGTCACCTCTGCTCAGACTCCAGACTCGCTAGAAG
CCATCCTGGACTTTTTGGATTTCAAAAGTGACAGCAGTATCATACTCCAGGAAAGGTTCCTCTATGCCTG
TGGCTTTGCCACCCACCCTGATGAAGAACTCCTACGAGCCCTCCTTAGTAAGTTCAAAGGTTCCTTTGCA
AGCAACGACATCAGAGAGTCGGTTATGATCATCATTGGAGCCCTGGTCAGGAAGCTGTGTCAGAATGAAG
GCTGCAAGCTCAAGGCAGTGGTGGAAGCTAAGAAGCTGATCCTGGGAGGACTTGAAAAACCAGAGAAGAA
AGAAGACACCACAATGTACCTGCTGGCCCTGAAGAATGCCTTGCTTCCCGAAGGCATCCCGCTCCTTCTG
AAGTATGCTGAGGCTGGAGAAGGGCCCGTCAGCCACCTGGCCACCACTGTTCTCCAGAGATACGATGTCT
CCTTCATCACAGATGAGGTGAAGAAGACCTTGAACAGGATATACCACCAGAATCGTAAGGTTCATGAGAA
GACGGTGCGCACAACTGCCGCTGCTGTCATCTTAAAGAACCCATCCTACATGGATGTGAAGAACATCCTG
CTGTCCATTGGGGAACTCCCGAAAGAGATGAACAAATACATGCTCACTGTTGTGCAAGACATCCTGCATT
TTGAAATGCCTGCAAGCAAAATGATCCGTCGAGTTCTCAAGGAGATGGCTGTTCACAATTATGACCGTTT
CTCCAAGAGTGGATCCTCTTCTGCCTATACTGGCTACGTAGAACGTAGCCCCCGTGCAGCGTCCACATAC
AGCCTTGACATCCTTTACTCTGGCTCTGGCATTCTGAGGAGAAGTAACCTGAACATCTTCCAGTACATCG
GGAAGGCAGAGCTTCATGGTAGTCAGGTGGTGATTGAAGCCCAAGGGCTGGAAGGCTTAATTGCAGCCAC
TCCTGATGAAGGAGAGGAGAACCTTGACTCTTATGCTGGCATGTCAGCCATCCTGTTTGATGTTCAGCTT
AGGCCTGTCACATTTTTTAATGGATACAGTGATTTGATGTCCAAAATGCTGTCGGCATCCGGCGACCCTG
TCAGCGTGGTGAAAGGGCTTATTCTGTTAATAGACCATTCTCAGGATATTCAGCTGCAATCTGGACTAAA
GGCCAATATGGAGATCCAGGGTGGTCTAGCTATTGATATTTCTGGTTCAATGGAATTCAGTCTGTGGTAT
CGAGAGTCTAAAACCCGAGTGAAAAATCGGGTGGCTGTGGTGATAACCAGCGACGTCACAGTGGATGCCT
CTTTTGTGAAAGCTGGTGTGGAAAGCAGAGCGGAGACAGAGGCTGGGCTGGAGTTCATCTCCACAGTGCA
GTTCTCACAGTACCCGTTCTTGGTCTGCATGCAGATGGACAAGGCTGAAGCCCCACTCAGGCAATTCGAG
ACAAAGTATGAAAGGCTATCTACAGGCAGGGGATATGTCTCTCGGAGAAGAAAAGAGAGCCTAGTGGCCG
GATGTGAACTCCCCCTCCATCAAGAGAACTCTGAGATGTGCAACGTGGTATTCCCACCTCAGCCAGAAAG
CGATAACTCCGGTGGATGGTTTTGA

Translation (894 aa):
MILLAVLFLCFFSSYSASVKGHTTGLSLNNERLYKLTYSTEVFLDGGKGKPQDSVGYKISSDVDVVLLWR
NPDGDDDQVIQVTITAVNVENAGQQRGEKSIFQGKSTPKIIGKDNLEALQRPMLLHLVRGKVKEFYSYEN
EPVGIENLKRGLASLFQMQLSSGTTNEVDISGDCKVTYQAQQDKVVKIKALDTCKIERSGFTTANQVLGV
SSKATSVTTYKIEDSFVTAVLAEETRAFALNFQQTIAGKIVSKQKLELKTTEAGPRMIPGKQVAGVIKAV
DSKYKAIPIVGQVLERVCKGCPSLAEHWKSIRKNLEPENLSKAEAVQSFLAFIQHLRTSRREEILQILKA
EKKEVLPQLVDAVTSAQTPDSLEAILDFLDFKSDSSIILQERFLYACGFATHPDEELLRALLSKFKGSFA
SNDIRESVMIIIGALVRKLCQNEGCKLKAVVEAKKLILGGLEKPEKKEDTTMYLLALKNALLPEGIPLLL
KYAEAGEGPVSHLATTVLQRYDVSFITDEVKKTLNRIYHQNRKVHEKTVRTTAAAVILKNPSYMDVKNIL
LSIGELPKEMNKYMLTVVQDILHFEMPASKMIRRVLKEMAVHNYDRFSKSGSSSAYTGYVERSPRAASTY
SLDILYSGSGILRRSNLNIFQYIGKAELHGSQVVIEAQGLEGLIAATPDEGEENLDSYAGMSAILFDVQL
RPVTFFNGYSDLMSKMLSASGDPVSVVKGLILLIDHSQDIQLQSGLKANMEIQGGLAIDISGSMEFSLWY
RESKTRVKNRVAVVITSDVTVDASFVKAGVESRAETEAGLEFISTVQFSQYPFLVCMQMDKAEAPLRQFE
TKYERLSTGRGYVSRRRKESLVAGCELPLHQENSEMCNVVFPPQPESDNSGGWF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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