NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37406.1 Public Mus musculus 16 Sim2 23 108 98 CCDS HistoryNCBI Gene:20465Re-query CCDS DB by CCDS ID:37406.1Re-query CCDS DB by GeneID:20465See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37406.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072182.8 ENSMUSP00000072043.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072182.8Link to Ensembl Protein Viewer:ENSMUSP00000072043.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000072182Re-query CCDS DB by Protein ID:ENSMUSP00000072043
Original member Current member NCBI NM_011377.2 NP_035507.2 Accepted alive Link to Nucleotide Sequence:NM_011377.2Link to Protein Sequence:NP_035507.2Re-query CCDS DB by Nucleotide ID:NM_011377Re-query CCDS DB by Protein ID:NP_035507Link to BLAST:NP_035507.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035507.2 657 Q61079 657 100% 0 0

Chromosomal Locations for CCDS 37406.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 94085816 94085990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94094300 94094382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94097167 94097256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94104667 94104775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94106258 94106343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94109284 94109483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94114923 94115029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94121148 94121295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94122603 94122771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94123165 94123576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 94125498 94125892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1974 nt):
ATGAAGGAGAAGTCCAAAAATGCGGCCAAAACCAGGAGGGAGAAGGAAAATGGCGAGTTTTACGAGCTGG
CCAAGCTGCTCCCGCTGCCTTCGGCCATCACCTCGCAGCTGGACAAAGCGTCCATCATCCGACTCACCAC
CAGCTACCTGAAGATGCGCGCGGTCTTCCCGGAAGGTCTAGGAGACGCGTGGGGACAGCCGAGCAGGACA
GGGCCTCTGGACAGCGTGGCAAAAGAGCTGGGATCCCATTTGCTGCAGACTCTAGATGGATTTGTGTTCG
TGGTGGCCTCTGATGGCAAAATCATGTATATATCTGAGACCGCTTCTGTCCATTTAGGCTTGTCCCAGGT
GGAGCTCACAGGCAACAGTATTTATGAATACATACATCCTTCTGACCACGACGAGATGACAGCCGTACTT
ACAGCCCACCCACCGCTCCACCATCACCTGCTCCAAGAGTACGAGATAGAGCGGTCTTTCTTTCTTCGAA
TGAAGTGCGTCTTGGCAAAACGAAACGCAGGCCTGACATGCAGTGGATACAAGGTCATTCACTGCAGCGG
CTACCTAAAGATCAGACAGTACATGCTGGACATGTCCCTGTACGACTCCTGTTACCAGATCGTGGGGCTG
GTGGCCGTGGGCCAGTCGCTACCGCCCAGCGCCATCACGGAGATCAAGCTCCACAGCAACATGTTCATGT
TCAGGGCCAGCCTTGACCTGAAGCTCATATTCCTGGACTCCAGGGTGACAGAGCTTACGGGCTATGAGCC
ACAAGACCTGATCGAAAAGACACTGTACCATCATGTGCATGGCTGTGACACCTTCCACCTCCGATATGCA
CACCACCTCTTGCTGGTGAAGGGCCAGGTCACCACCAAATACTACCGGCTGCTGTCCAAGCTGGGCGGCT
GGGTCTGGGTGCAGAGCTACGCCACCGTGGTGCACAACAGCCGCTCCTCCCGGCCTCACTGCATCGTGAG
TGTCAATTATGTTCTCACGGATGTTGAATACAAGGAACTTCAGCTGTCTCTGGACCAGGTATCCACCTCT
AAGTCCCAGGAGTCCTGGAGAACCACCTTGTCTACCTCACAAGAAACTAGGAAATCAGCTAAACCCAAAA
ACACAAAGATGAAGACAAAGCTGAGAACCAACCCATATCCCCCACAGCAATACAGCTCCTTCCAAATGGA
CAAACTGGAGTGCAGCCAGGTGGGAAACTGGAGAACTAGTCCCCCCACAAATGCTGTGGCTCCCCCGGAA
CAGCAGCTCCATTCAGAAGCCAGCGACCTTTTATATGGGCCGCCCTACAGCCTCCCCTTCTCCTACCATT
ATGGACACTTCCCATTGGACTCTCACGTCTTCAGCAGCAAGAAGCCAGGATTGCCCGCCAAGTTCGGGCA
GCCCCAAGGATCCCCGTGTGAGGTGGCACGCTTCTTCCTGAGCACACTGCCAGCCAGCAGCGAATGCCAG
TGGCACTGTGCCAACTCTCTAGTGCCCAGCAGCTCATCGCCAGCTAAAAACCTTTCTGAGCCTTCTCCTG
TGAATGCTGCCCGGCATGGTCTTGTGCCAAACTATGAAGCGCCCTCCGCAGCCGCGCGCAGGTTCTGCGA
GGACCCCGCGCCCCCAAGCTTCCCGAGCTGCGGCCACTACCGCGAGGAGCCGGCGCTGGGCCCTGCCAAG
GCGCCTCGCCAGGCGTCCCGGGACGCAGCCCGGCTGGCGCTGGCCCGAGCGCCCCCCGAGTGCTGCGCGC
CGCCCGCCCCCGAGCCGCAGGCGCCGGCGCAGTTGCCCTTCGTGCTGCTCAACTACCACCGCGTGCTGGC
GCGCCGCGGGCCTCTGGGGAGCGCTGCGCCCGGAGCCCCCGAGGCGGCCGGCTCGCTGAGGCCCCGACAC
CCAGGCCCCGTCGCCGCCTCTGCGCCCGGCGCGCCCCGACCGCATTACCTGGGCGCCTCGGTCATCATCA
CCAACGGCAGGTGA

Translation (657 aa):
MKEKSKNAAKTRREKENGEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRAVFPEGLGDAWGQPSRT
GPLDSVAKELGSHLLQTLDGFVFVVASDGKIMYISETASVHLGLSQVELTGNSIYEYIHPSDHDEMTAVL
TAHPPLHHHLLQEYEIERSFFLRMKCVLAKRNAGLTCSGYKVIHCSGYLKIRQYMLDMSLYDSCYQIVGL
VAVGQSLPPSAITEIKLHSNMFMFRASLDLKLIFLDSRVTELTGYEPQDLIEKTLYHHVHGCDTFHLRYA
HHLLLVKGQVTTKYYRLLSKLGGWVWVQSYATVVHNSRSSRPHCIVSVNYVLTDVEYKELQLSLDQVSTS
KSQESWRTTLSTSQETRKSAKPKNTKMKTKLRTNPYPPQQYSSFQMDKLECSQVGNWRTSPPTNAVAPPE
QQLHSEASDLLYGPPYSLPFSYHYGHFPLDSHVFSSKKPGLPAKFGQPQGSPCEVARFFLSTLPASSECQ
WHCANSLVPSSSSPAKNLSEPSPVNAARHGLVPNYEAPSAAARRFCEDPAPPSFPSCGHYREEPALGPAK
APRQASRDAARLALARAPPECCAPPAPEPQAPAQLPFVLLNYHRVLARRGPLGSAAPGAPEAAGSLRPRH
PGPVAASAPGAPRPHYLGASVIITNGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH