NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27405.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27405.1 Public Mus musculus 15 Ctnnd2 23 108 98 CCDS HistoryNCBI Gene:18163Re-query CCDS DB by CCDS ID:27405.1Re-query CCDS DB by GeneID:18163See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27405.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000081728.6 ENSMUSP00000080427.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000081728.6Link to Ensembl Protein Viewer:ENSMUSP00000080427.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000081728Re-query CCDS DB by Protein ID:ENSMUSP00000080427
Original member Current member NCBI NM_008729.3 NP_032755.2 Accepted alive Link to Nucleotide Sequence:NM_008729.3Link to Protein Sequence:NP_032755.2Re-query CCDS DB by Nucleotide ID:NM_008729Re-query CCDS DB by Protein ID:NP_032755Link to BLAST:NP_032755.2

Chromosomal Locations for CCDS 27405.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 30173127 30173163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30332010 30332146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30480782 30480894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30619222 30619253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30619823 30619939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30634644 30634816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30646769 30647324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30669412 30669606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30683215 30683470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30775099 30775231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30806686 30806899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30847228 30847411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30881123 30881240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30887094 30887279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30905660 30905833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30920712 30920786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30921855 30922005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30966756 30966966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 30972793 30972877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31004949 31005075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31009033 31009164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31020701 31020774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 31027412 31027672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3741 nt):
ATGTTCGCCAGGAAGCAGTCGGGCGCCGCGCCGTTCGGAGCTATGCCTGTCCCAGACCAGCCTCCATCAG
CCTCAGAGAAGAACAGCTCCTTGAGCCCAGGCTTAAACACCTCCAATGGTGATGGCTCTGAGACGGAAAC
CACCTCTGCTATCCTTGCCTCCGTCAAAGAACAGGAATTACAGTTTGAAAGGCTGACCCGAGAGCTGGAG
GCTGAACGCCAGATCGTAGCCAGCCAGCTGGAGCGATGCAAGCTTGGCTCGGAGACAGGAAGCATGAGCA
GTATCAGTTCAGCAGAGCAGTTTCACTGGCAGACACAAGATGGCCAAAAAGATATCGAAGATGAACTTAC
AACGGGCCTTGAGCTGGTGGACTCCTGTATCCGCTCTCTGCAGGAGTCAGGCATTCTGGACCCACAGGAT
TACTCCACAAGTGAAAGGCCTAGCCTGCTCTCCCAGAGTGCACTTCAGCTCAATTCTAAACCTGAAGGGT
CTTTCCAGTATCCGGCCAGCTACCATAGCAACCAGACCCTGGCCCTGGGTGACACAGCCCCTTCTCAGCT
CCCAGCACGCAGCACGCAAGCCCGAGCTGCCGGCCAGAGCTTCAGCCAGGGCACGACCGGCCGCGCGGGG
CACCTGGCGGGCTCCGAGCCTGCGCCACCGCCTCCGCCTCCGCGGGAACCGTTCGCGCCCAGCCTGGGCA
GCGCCTTCCACCTGCCCGACGCGCCGCCCGCCGCCGCGGCGCTCTACTACTCCAGCTCCACGCTGCCCGC
GCCGCCGCGCGGGGGCTCCCCGCTGACCACCACGCAGGGCGGCTCACCCACCAAGCTGCAGCGCGGAGGC
TCGGCCCCCGAGGGTGCCGCCTACGCCGCGCCGCGCGGCTCCTCGCCCAAGCAGTCGCCCAGCCGCCTGG
CTAAGTCCTACAGCACCAGCTCGCCCATCAACATCGTCGTGTCCTCGGCCGGCCTGTCCCCGATCCGCGT
GACCTCGCCCCCCACCGTGCAGTCCACCATCTCCTCTTCGCCCATCCACCAGCTGAGCTCCACCATCGGC
ACCTACGCCACCCTGTCGCCCACCAAGCGCCTGGTCCACGCGTCTGAGCAGTACAGCAAGCATTCGCAGG
AGCTGTATGCCACCGCCACCCTCCAGAGGCCGGGCAGCCTGGCAGCTGGATCCCGAGCCTCGTATAGCAG
CCAGCATGGGCACCTGGCCCCTGAGCTGCGGGCCCTGCAGTCCCCAGAGCACCACATAGACCCCATCTAT
GAAGACCGTGTCTATCAGAAGCCCCCTATGAGGAGTCTCAGCCAGAGCCAGGGGGATCCTCTGCCGCCAG
CACATACCGGCACCTTCCGCACGAGCACAGCCCCGTCCTCCCCTGGTGTCGACTCCGTCCCCTTGCAGCG
CACAGGCAGCCAACACGGGCCACAGAATGCCGCCGCAGCCACCTTCCAGAGGGCCAGCTATGCTGCCGGC
CCAGCCTCCAACTACGCAGACCCCTACCGACAGCTGCAGTATTGTGCCTCCGTTGACTCTCCGTACAGCA
AATCTGGCCCTGCCCTCCCACCCGAAGGCACCTTGGCCAGATCCCCATCCATCGACAGCATTCAGAAAGA
CCCCAGGGAGTTTGGATGGAGAGACCCGGAGCTGCCTGAAGTGATACAGATGTTACAGCACCAGTTCCCT
TCAGTCCAGTCCAATGCTGCAGCTTACCTGCAACACCTCTGTTTTGGAGACAATAAAATTAAGGCAGAGA
TAAGGAGACAAGGAGGGATACAGCTCCTGGTGGACCTGCTGGATCACCGAATGACAGAAGTCCACCGTAG
TGCCTGTGGGGCTCTGAGGAACCTGGTGTATGGGAAGGCCAATGATGATAACAAAATCGCCCTGAAAAAC
TGTGGTGGTATCCCAGCGCTGGTGAGACTCCTTCGCAAGACCACAGACCTGGAGATCCGGGAGCTGGTCA
CAGGAGTCCTTTGGAACCTCTCATCATGTGATGCACTCAAAATGCCAATCATCCAGGACGCCCTGGCAGT
GCTGACCAATGCGGTGATTATCCCTCACTCGGGCTGGGAGAATTCACCTCTTCAGGATGATCGGAAAATA
CAGCTGCATTCATCACAGGTGCTGCGCAACGCCACTGGGTGCCTAAGGAATGTAAGTTCAGCTGGAGAGG
AGGCCCGCCGAAGGATGCGGGAGTGTGATGGGCTCACGGATGCCTTGCTGTACGTGATCCAGTCTGCACT
GGGGAGCAGTGAGATCGATAGCAAGACCGTTGAAAACTGTGTGTGCATCTTGAGGAACCTCTCCTACCGG
CTAGCAGCAGAAACGTCTCAGGGACAGCACATGGGCACAGACGAGCTGGACGGGCTGCTCTGCGGGGAGA
CCAACGGCAAAGACACAGAGAGTTCTGGGTGCTGGGGCAAGAAGAAGAAGAAAAAGAAATCCCAGGACCA
GTGGGATGGAGTAGGACCTCTTCCAGACTGTGCAGAGCCACCAAAAGGGATCCAGATGCTGTGGCACCCG
TCCATAGTCAAACCCTACCTCACACTGCTCTCTGAGTGCTCAAACCCAGACACGCTGGAAGGGGCAGCGG
GCGCCCTGCAGAACTTGGCTGCAGGGAGCTGGAAGGGCTGGGCTGAGGATGTGGCAGGCATGGCGTATGC
CCTACGTTCACTGCCAGAGGGGGCTCCCTGCCTGCCACAGTGGTCCGTGTATATCCGAGCTGCTGTCCGG
AAAGAGAAAGGCCTGCCCATTCTTGTGGAGCTCCTCCGAATAGACAATGACCGTGTAGTGTGTGCAGTGG
CCACAGCACTTCGGAACATGGCCCTCGATGTCAGAAACAAGGAACTCATTGGCAAGTATGCCATGCGAGA
CCTGGTCCACCGGCTTCCTGGTGGGAACAACAGCAACAACTCGGGGAGCAAGGCCATGTCAGATGACACC
GTGACGGCCGTGTGCTGCACCCTGCATGAAGTGATCACCAAGAACATGGAGAATGCCAAGGCCTTACGGG
ATGCTGGTGGCATCGAGAAGTTGGTCGGCATCTCTAAAAGCAAAGGAGACAAGCACTCTCCAAAGGTGGT
CAAGGCTGCTTCTCAGGTCCTAAACAGCATGTGGCAGTATCGCGATCTGAGGAGTCTCTACAAGAAGGAT
GGATGGTCACAATATCACTTTGTAGCCTCATCTTCAACCATCGAGAGGGATCGACAAAGGCCCTACTCCT
CCTCCCGCACACCCTCCATCTCTCCCGTGCGTGTGTCTCCCAACAACCGCTCAGCAAGTGCCCCAGCTTC
ACCTCGGGAAATGATCAGCCTCAAAGAAAGGAAGACGGACTACGAGTCCGCTGGCAACAACGCCACTTAC
CACGGAACTAAAGGAGAACACACCTCCAGAAAAGACACCATGACAGCTCAAAACACTGGAGTTTCAACTT
TGTACAGGAATTCATACGGTGCGCCCGCTGAAGACATCAAACAGAACCAGGTTTCCACACAGCCTGTCCC
TCAGGAGCCCAGCAGGAAAGACTACGAGACCTACCAGCCCTTTCCGAATTCCACACGAAATTATGATGAG
TCCTTCTTTGAGGACCAGGTCCACCACCGCCCTCCAGCCAGCGAGTACACCATGCACCTGGGCCTCAAGT
CCACTGGCAACTATGTCGACTTCTACTCTGCAGCCCGTCCTTACAGTGAACTGAACTATGAAACGAGCCA
CTACCCGGCCTCGCCCGACTCCTGGGTGTAA

Translation (1246 aa):
MFARKQSGAAPFGAMPVPDQPPSASEKNSSLSPGLNTSNGDGSETETTSAILASVKEQELQFERLTRELE
AERQIVASQLERCKLGSETGSMSSISSAEQFHWQTQDGQKDIEDELTTGLELVDSCIRSLQESGILDPQD
YSTSERPSLLSQSALQLNSKPEGSFQYPASYHSNQTLALGDTAPSQLPARSTQARAAGQSFSQGTTGRAG
HLAGSEPAPPPPPPREPFAPSLGSAFHLPDAPPAAAALYYSSSTLPAPPRGGSPLTTTQGGSPTKLQRGG
SAPEGAAYAAPRGSSPKQSPSRLAKSYSTSSPINIVVSSAGLSPIRVTSPPTVQSTISSSPIHQLSSTIG
TYATLSPTKRLVHASEQYSKHSQELYATATLQRPGSLAAGSRASYSSQHGHLAPELRALQSPEHHIDPIY
EDRVYQKPPMRSLSQSQGDPLPPAHTGTFRTSTAPSSPGVDSVPLQRTGSQHGPQNAAAATFQRASYAAG
PASNYADPYRQLQYCASVDSPYSKSGPALPPEGTLARSPSIDSIQKDPREFGWRDPELPEVIQMLQHQFP
SVQSNAAAYLQHLCFGDNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVYGKANDDNKIALKN
CGGIPALVRLLRKTTDLEIRELVTGVLWNLSSCDALKMPIIQDALAVLTNAVIIPHSGWENSPLQDDRKI
QLHSSQVLRNATGCLRNVSSAGEEARRRMRECDGLTDALLYVIQSALGSSEIDSKTVENCVCILRNLSYR
LAAETSQGQHMGTDELDGLLCGETNGKDTESSGCWGKKKKKKKSQDQWDGVGPLPDCAEPPKGIQMLWHP
SIVKPYLTLLSECSNPDTLEGAAGALQNLAAGSWKGWAEDVAGMAYALRSLPEGAPCLPQWSVYIRAAVR
KEKGLPILVELLRIDNDRVVCAVATALRNMALDVRNKELIGKYAMRDLVHRLPGGNNSNNSGSKAMSDDT
VTAVCCTLHEVITKNMENAKALRDAGGIEKLVGISKSKGDKHSPKVVKAASQVLNSMWQYRDLRSLYKKD
GWSQYHFVASSSTIERDRQRPYSSSRTPSISPVRVSPNNRSASAPASPREMISLKERKTDYESAGNNATY
HGTKGEHTSRKDTMTAQNTGVSTLYRNSYGAPAEDIKQNQVSTQPVPQEPSRKDYETYQPFPNSTRNYDE
SFFEDQVHHRPPASEYTMHLGLKSTGNYVDFYSAARPYSELNYETSHYPASPDSWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH