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Report for CCDS83970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83970.1 Public Mus musculus 12 Rab15 23 108 98 CCDS HistoryNCBI Gene:104886Re-query CCDS DB by CCDS ID:83970.1Re-query CCDS DB by GeneID:104886See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118604.7 ENSMUSP00000112789.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118604.7Link to Ensembl Protein Viewer:ENSMUSP00000112789.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118604Re-query CCDS DB by Protein ID:ENSMUSP00000112789
Original member Current member EBI ENSMUST00000121716.7 ENSMUSP00000113299.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121716.7Link to Ensembl Protein Viewer:ENSMUSP00000113299.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121716Re-query CCDS DB by Protein ID:ENSMUSP00000113299
Original member Current member NCBI NM_001347405.1 NP_001334334.1 Accepted alive Link to Nucleotide Sequence:NM_001347405.1Link to Protein Sequence:NP_001334334.1Re-query CCDS DB by Nucleotide ID:NM_001347405Re-query CCDS DB by Protein ID:NP_001334334Link to BLAST:NP_001334334.1
Original member Current member NCBI NM_001347406.1 NP_001334335.1 Accepted alive Link to Nucleotide Sequence:NM_001347406.1Link to Protein Sequence:NP_001334335.1Re-query CCDS DB by Nucleotide ID:NM_001347406Re-query CCDS DB by Protein ID:NP_001334335Link to BLAST:NP_001334335.1
Original member Current member NCBI NM_001347407.1 NP_001334336.1 Accepted alive Link to Nucleotide Sequence:NM_001347407.1Link to Protein Sequence:NP_001334336.1Re-query CCDS DB by Nucleotide ID:NM_001347407Re-query CCDS DB by Protein ID:NP_001334336Link to BLAST:NP_001334336.1

Chromosomal Locations for CCDS 83970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 76800243 76800401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76800566 76800631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76801892 76801981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76803068 76803145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76803568 76803628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76804443 76804489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGAAGACTATCGAAGTAGACGGCATCAAAGTGAGAATACAGATTTGGGACACAGCAGGGCAGGAGAGGT
ACCAGACTATCACAAAGCAGTACTATCGGCGAGCCCAGGGAATATTTTTAGTCTACGACATTAGCAGTGA
GCGCTCCTATCAGCATATCATGAAGTGGGTCAGTGACGTGGATGAGTACGCTCCAGAAGGAGTCCAGAAG
ATCCTAATTGGGAATAAGGCTGATGAAGAGCAGAAACGGCAGGTGGGGAGAGAGCAGGGGCAGCAGCTGG
CTAAGGAGTACGGCATGGACTTCTACGAAACAAGTGCCTGCACCAACCTTAATATTAAAGAGTCCTTCAC
TCGTCTGACGGAGCTGGTGCTGCAGGCCCACAGGAAAGAGCTGGATGGTCTCCGAACACGTGCCAGCAAC
GAGCTCGCACTGGCCGAGCTGGAGGAGGACGAAGGCAAACCTGAGGGCCCAGCAAACTCTTCAAAGACCT
GCTGGTGCTGA

Translation (166 aa):
MKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQK
ILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQAHRKELDGLRTRASN
ELALAELEEDEGKPEGPANSSKTCWC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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