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Report for CCDS40839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40839.1 Public Mus musculus X Akap4 23 108 98 CCDS HistoryNCBI Gene:11643Re-query CCDS DB by CCDS ID:40839.1Re-query CCDS DB by GeneID:11643See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115750.7 ENSMUSP00000111416.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115750.7Link to Ensembl Protein Viewer:ENSMUSP00000111416.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115750Re-query CCDS DB by Protein ID:ENSMUSP00000111416
Original member Current member EBI ENSMUST00000115751.2 ENSMUSP00000111417.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115751.2Link to Ensembl Protein Viewer:ENSMUSP00000111417.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115751Re-query CCDS DB by Protein ID:ENSMUSP00000111417
Original member Current member NCBI NM_001042542.2 NP_001036007.1 Accepted alive Link to Nucleotide Sequence:NM_001042542.2Link to Protein Sequence:NP_001036007.1Re-query CCDS DB by Nucleotide ID:NM_001042542Re-query CCDS DB by Protein ID:NP_001036007Link to BLAST:NP_001036007.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036007.1 840 Q60662-2 840 100% 0 0

Chromosomal Locations for CCDS 40839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 7070431 7070526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7073149 7073199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7073635 7073736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7075709 7077826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 7078264 7078419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGTCTGACGATATTGACTGGTTACACAGCCGCAGAGGCGTGTGCAAGGTAGATCTTTACAGTCCAAAAG
GA
CAACAAGATCAGGACCGAAAAGTGATATGCTTTGTGGATGTGTCTACCTTGAATGTGGAAGATAAAGA
T
TCCAAGGGTGCTGCTGGTTCCAGGTCAGAAGGCGAGTTAAATCTGGAGACTCTGGAAGAAAAAGAGATT
ATC
GTAATCAAGGACACTGAAAAACAAGACCAGTCTAAGACGGAGGGATCTGTGTGCCTTTTCAAACAAG
CT
CCCTCTGATCCTATAAGTGTCCTCAACTGGCTCCTCAATGATCTCCAGAAGTATGCCTTGGGTTTCCA
A
CATGCATTAAGCCCCTCAGCCTCTAGCTGTAAACATAAAGTGGGAGACCTAGAGGGTGACTATAGCAAA
ATA
CCATCTGAGAACTGCTACAGTGTGTACGCTGATCAAGTAAACTTTGATTATTTGAACAAAGGACCTC
AA
AACCTTCGCCTAGAAATGGCGGCATCCAAAAACACCAACAATAACCAAAGTCCCTCAAATCCTGCAAC
C
AAATCTCCTAGCAATCAGAGGTCAGTTGCCACTCCTGAGGGAGAATGTTCTATGGACGACCTTTCCTTC
TAT
GTCAACCGATTGTCATCTCTGGTAATCCAAATGGCCCGTAAGGAAATCAAGGACAAATTGGAAGGTG
GA
AGCAAATGTCTCCATCATTCCATGTATACATCAGGAGATAAAGGGAAAACCAGCCCCCGGAGTGCTGT
C
AGCAAAATTGCTTCGGAGATGGCCCATGAAGCTGTTGAACTGACCTCATCAGAAATGCGTGGCAATGGA
GAG
GATTGCAGGGATGGCCGGAAAACCTTTTTGTATAGTGAAATGTGTAACAAGAACAAGTGTGGCGAAA
AG
CAGCAGATGTGCCCAAAAGACAGCAAAGAATTTGCGGATTCCATCAGCAAGGGGCTTATGGTTTATGC
A
AATCAAGTAGCATCTGACATGATGGTCTCTGTTATGAAAACTTTGAAAGTACACAGCTGTGGGAAGCCA
ATT
CCGGCTTGTGTGGTCCTGAAGAGGGTACTATTGAAGCACACCAAGGAAATTGTATCTGATCTGATTG
AT
TCATGTATGAAAAACTTGCATAACATAACAGGAGTCCTGATGACAGACTCAGACTTCGTTTCTGCTGT
C
AAGAGGAATCTTTTCAATCATGGTAAACAAAATGCAGCGGACATCATGGAGGCCATGCTAAAGCGTCTG
GTC
AGTGCTCTTCTTGGTGAGAAGAAGGAGACTAAGTCTCAAAGTCTGGCCTATGCAACCTTAAAAGCTG
GA
ACTAATGATCCGAAATGCAAGAATCAGAGCCTTGAGTTCTCAGCTATGAAAGCTGAAATGAAAGGAAA
A
GATAAATGCAAATCCAAAGCAGATCCATGCTGCAAATCGTTGACAAGTGCTGAGAGAGTCAGCGAGCAT
ATC
CTCAAAGAGAGCCTTACTATGTGGAACAACCAGAAGCAAGGAAACCAAGGCAAAGTGACTAACAAAG
TT
TGCTGCACCAGTAAAGATGAGAAGAGAGAAAAGATCAGTCCTTCCACAGATTCACTGGCCAAGGATCT
A
ATTGTCTCTGCCCTTATGCTCATTCAATACCATCTGACCCAACAAGCCAAGGGCAAAGATCCATGTGAA
GAG
GAGTGCCCTGGTTCCTCCATGGGGTATATGTCCCAAAGTGCACAATACGAAAAATGTGGAGGTGGCC
AA
AGTTCTAAATCACTTTCAATGAAGCATTTTGAAACTCGTGGAGCTCCTGGACCATCTACATGTATGAA
G
GAAAATCAACTGGAGTCCCAGAAGATGGATATGTCAAACATGGTTCTGTCCCTGATTCAGAAACTCCTG
AGT
GAGAGCCCTTTCAGTTGCGATGAACTAACTGAAAGTGACAATAAGCGTTGTTGTGATCCTAGATCAA
GC
AAAGCAGCTCCCATGGCCAAGAGACCTGAAGAGCAATGCCAAGACAATGCAGAACTAGACTTCATCAG
T
GGGATGAAGCAAATGAACCGCCAGTTTATAGATCAGCTGGTAGAATCCGTGATGAAACTCTGCCTGATC
ATG
GCTAAGTACAGCAACAATGGAGCAGCCCTGGCTGAGCTGGAAGAACAAGCAGCCCTGGTAGGCAGTG
GC
TCCAGATGTGGCCGTGATGCTATGATGTCACAAAATTATTCTGAAACTCCTGGCCCTGAAGTTATTGT
C
AACAATCAGTGCTCTACAACTAACTTGCAGAAGCAGCTGCAGGCTGTCCTGCAATGGATTGCAGCCTCT
CAA
TTCAATGTGCCCATGCTCTACTTCATGGGAGACGATGATGGACAACTAGAGAAGCTCCCTGAAGTTT
CA
GCTAAGGCTGCAGAGAAGGGGTACAGTGTAGGAGATCTTCTTCAGGAGGTCATGAAGTTTGCCAAAGA
A
CGACAACTGGATGAAGCCGTGGGCAACATGGCTAGAAAGCAGCTGCTAGACTGGCTTCTCGCTAACCTG
TAA


Translation (840 aa):
MSDDIDWLHSRRGVCKVDLYSPKGQQDQDRKVICFVDVSTLNVEDKDSKGAAGSRSEGELNLETLEEKEI
I
VIKDTEKQDQSK
TEGSVCLFKQAPSDPISVLNWLLNDLQKYALGFQHALSPSASSCKHKVGDLEGDYSK
I
PSENCYSVYADQVNFDYLNKGPQNLRLEMAASKNTNNNQSPSNPATKSPSNQRSVATPEGECSMDDLSF
Y
VNRLSSLVIQMARKEIKDKLEGGSKCLHHSMYTSGDKGKTSPRSAVSKIASEMAHEAVELTSSEMRGNG
E
DCRDGRKTFLYSEMCNKNKCGEKQQMCPKDSKEFADSISKGLMVYANQVASDMMVSVMKTLKVHSCGKP
I
PACVVLKRVLLKHTKEIVSDLIDSCMKNLHNITGVLMTDSDFVSAVKRNLFNHGKQNAADIMEAMLKRL
V
SALLGEKKETKSQSLAYATLKAGTNDPKCKNQSLEFSAMKAEMKGKDKCKSKADPCCKSLTSAERVSEH
I
LKESLTMWNNQKQGNQGKVTNKVCCTSKDEKREKISPSTDSLAKDLIVSALMLIQYHLTQQAKGKDPCE
E
ECPGSSMGYMSQSAQYEKCGGGQSSKSLSMKHFETRGAPGPSTCMKENQLESQKMDMSNMVLSLIQKLL
S
ESPFSCDELTESDNKRCCDPRSSKAAPMAKRPEEQCQDNAELDFISGMKQMNRQFIDQLVESVMKLCLI
M
AKYSNNGAALAELEEQAALVGSGSRCGRDAMMSQNYSETPGPEVIVNNQCSTTNLQKQLQAVLQWIAAS
Q
FNVPMLYFMGDDDGQLEK
LPEVSAKAAEKGYSVGDLLQEVMKFAKERQLDEAVGNMARKQLLDWLLANL



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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