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Report for CCDS37338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37338.1 Public Mus musculus 16 Rabl3 23 108 98 CCDS HistoryNCBI Gene:67657Re-query CCDS DB by CCDS ID:37338.1Re-query CCDS DB by GeneID:67657See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37338.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023524.12 ENSMUSP00000023524.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023524.12Link to Ensembl Protein Viewer:ENSMUSP00000023524.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000023524Re-query CCDS DB by Protein ID:ENSMUSP00000023524
Original member Current member NCBI NM_001042499.1 NP_001035964.1 Accepted alive Link to Nucleotide Sequence:NM_001042499.1Link to Protein Sequence:NP_001035964.1Re-query CCDS DB by Nucleotide ID:NM_001042499Re-query CCDS DB by Protein ID:NP_001035964Link to BLAST:NP_001035964.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035964.1 236 Q9D4V7-1 236 100% 0 0

Chromosomal Locations for CCDS 37338.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 37539915 37539960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37541847 37541938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37556821 37556950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37559995 37560109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37563616 37563766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37567320 37567391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37570388 37570426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 37571030 37571095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGCGTCCCTGGATCGGGTGAAGGTTCTGGTGTTGGGAGACTCAGGTGTTGGGAAATCTTCACTCGTCC
ATCTTCTGTGCCACAATCAAGTGTTAGGAAATCCGTCATGGACTGTGGGCTGCTCGGTGGATATCAGAGT
TCATGACTACAAAGAAGGGACCCCTGAAGAGAAGACATACTATATAGAACTATGGGATGTTGGAGGCTCT
GTGGGCAGTGCCAGCAGTGTGAAAAGCACAAGAGCGGTGTTCTACAACTCTGTAAACGGCATCATTTTAG
TACATGACTTAACAAATAAGAAGTCATCTCAAAACTTATATCGCTGGTCATTGGAAGTTCTCAATCGGGA
TGCAGTTCCAACCGGAGTCCTGGTGACAAATGGGGATTATGACCGAGAACAGTTTGCTGATAACCAAATC
CCACTGTTGGTAATAGGGACTAAACTGGACCAGATTCATGAAACCAAGCGCCATGAAGTTTTAATCAGGA
CTGCTTTCCTGGCTGAGGACTTCAATGCTGAAGAGATTAATTTGGATTGCACAAACCCACGGTCCTCAGC
TGCAGGCTCCTCCAATGCTGTCAAGCTCAGTAGATTTTTTGATAAGGTTATAGAGAAGAGATATTTTTTT
AGAGAAGGTAATCAGATTCCGGGCTTTTCTGATCGGAAGAGGTTTGGAGGAGGGGCACTGAAGAACTTCC
ACTGTGACTGA

Translation (236 aa):
MASLDRVKVLVLGDSGVGKSSLVHLLCHNQVLGNPSWTVGCSVDIRVHDYKEGTPEEKTYYIELWDVGGS
VGSASSVKSTRAVFYNSVNGIILVHDLTNKKSSQNLYRWSLEVLNRDAVPTGVLVTNGDYDREQFADNQI
PLLVIGTKLDQIHETKRHEVLIRTAFLAEDFNAEEINLDCTNPRSSAAGSSNAVKLSRFFDKVIEKRYFF
REGNQIPGFSDRKRFGGGALKNFHCD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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