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Report for CCDS29893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29893.1 Public Mus musculus 19 Gsto1 23 108 98 CCDS HistoryNCBI Gene:14873Re-query CCDS DB by CCDS ID:29893.1Re-query CCDS DB by GeneID:14873See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29893.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026050.7 ENSMUSP00000026050.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026050.7Link to Ensembl Protein Viewer:ENSMUSP00000026050.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026050Re-query CCDS DB by Protein ID:ENSMUSP00000026050
Original member Current member NCBI NM_010362.3 NP_034492.1 Accepted alive Link to Nucleotide Sequence:NM_010362.3Link to Protein Sequence:NP_034492.1Re-query CCDS DB by Nucleotide ID:NM_010362Re-query CCDS DB by Protein ID:NP_034492Link to BLAST:NP_034492.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034492.1 240 O09131 240 100% 0 0

Chromosomal Locations for CCDS 29893.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47855089 47855122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47855215 47855323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47857859 47858081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47859432 47859530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47863379 47863482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47864297 47864450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGTCGGGAGAATCCTCCAGGAGCCTGGGGAAGGGAAGCGCGCCCCCCGGCCCGGTCCCGGAGGGCCAGA
TCCGCGTCTACAGCATGAGGTTCTGCCCCTTCGCTCAGAGGACGCTGATGGTCCTGAAGGCCAAGGGAAT
CCGGCACGAAGTCATCAATATCAACCTGAAGAATAAGCCCGAGTGGTTCTTTGAGAAGAATCCCCTTGGG
CTGGTGCCGGTTCTGGAGAACAGCCAGGGTCACTTGGTCACCGAATCTGTCATCACTTGTGAGTACCTGG
ATGAGGCCTACCCAGAGAAGAAGTTATTTCCAGATGACCCGTACAAGAAGGCACGTCAGAAGATGACCCT
TGAGTCATTCTCTAAGGTGCCGCCTTTGATTGCAAGCTTTGTTAGGTCGAAGAGAAAGGAAGACTCTCCG
AACCTAAGGGAAGCGTTGGAGAACGAATTCAAAAAGCTAGAGGAGGGCATGGATAATTACAAGAGCTTCC
TTGGTGGGGATTCTCCTTCTATGGTTGATTATCTTACTTGGCCTTGGTTTCAGCGACTGGAAGCATTGGA
GCTCAAGGAGTGTCTAGCCCACACCCCCAAGCTCAAGCTCTGGATGGCGGCCATGCAGCAAGACCCTGTG
GCATCCTCTCACAAAATTGATGCCAAGACCTACCGCGAGTACTTAAATCTCTACCTACAGGACAGCCCCG
AGGCCTGTGATTATGGGCTCTGA

Translation (240 aa):
MSGESSRSLGKGSAPPGPVPEGQIRVYSMRFCPFAQRTLMVLKAKGIRHEVININLKNKPEWFFEKNPLG
LVPVLENSQGHLVTESVITCEYLDEAYPEKKLFPDDPYKKARQKMTLESFSKVPPLIASFVRSKRKEDSP
NLREALENEFKKLEEGMDNYKSFLGGDSPSMVDYLTWPWFQRLEALELKECLAHTPKLKLWMAAMQQDPV
ASSHKIDAKTYREYLNLYLQDSPEACDYGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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