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Report for CCDS28010.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28010.1 Public Mus musculus 16 Scarf2 23 108 98 CCDS HistoryNCBI Gene:224024Re-query CCDS DB by CCDS ID:28010.1Re-query CCDS DB by GeneID:224024See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28010.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000012161.4 ENSMUSP00000012161.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000012161.4Link to Ensembl Protein Viewer:ENSMUSP00000012161.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000012161Re-query CCDS DB by Protein ID:ENSMUSP00000012161
Original member Current member NCBI NM_153790.3 NP_722485.1 Accepted alive Link to Nucleotide Sequence:NM_153790.3Link to Protein Sequence:NP_722485.1Re-query CCDS DB by Nucleotide ID:NM_153790Re-query CCDS DB by Protein ID:NP_722485Link to BLAST:NP_722485.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722485.1 833 P59222 833 100% 0 0

Chromosomal Locations for CCDS 28010.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17797379 17797527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17802367 17802425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17802516 17802617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17802780 17803299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17803382 17803600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17803737 17803865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17804306 17804409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17804486 17804603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17804809 17804924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17806349 17806501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17806752 17807584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2502 nt):
ATGGAGGGCGCAGGGTCCCGGGGGGCCGGGCCGGCGCGGCGCCAGGGAGCCCGAGGGCTGGGACTGCTGC
TGCTGCTCTGGCTGCTGCCCGGTCTCGCGGCGCCCCAGGACTTGAACCCGCGAGGCCGCAACGTGTGCCG
CACGCCCGGTTCCCAGGTGCTCACGTGTTGCGCTGGCTGGAGGCAGCTGGGGGATGAGTGTGGGATAGCG
GTGTGCGAAGGCAATTCCACGTGCTCAGAAAACGAGGTGTGCGTGCGGCCAGGCGAATGCCGCTGCCGAC
ATGGCTACTTTGGTGCCAACTGCGACACAAAGTGCCCGCGCCAGTTCTGGGGCCCTGACTGCAAGGAGAG
GTGCAGTTGCCACCCGCACGGACAGTGCGAGGACGTGACCGGACAGTGTACGTGTCACGCGCGCCGCTGG
GGTGCGCGCTGCGAGCATGCTTGCCAATGCCAGCATGGCACGTGCCACCCGCGGAGCGGCGCGTGCCGGT
GCGAGCCGGGCTGGTGGGGTGCGCAATGCGCTAGCGCTTGCTATTGCAGCGCTACTTCCCGGTGCGATCC
ACAGACAGGCGCCTGCCTGTGCCACGTAGGCTGGTGGGGCCGCAGCTGTAACAACCAGTGCGCCTGCAAC
TCGTCGCCCTGCGAGCAGCAGAGTGGCCGCTGCCAGTGTCGCGAGCGCATGTTTGGCGCCCGCTGTGATC
GCTATTGCCAGTGCTCTCACGGTCGCTGCCACCCGGTGGACGGCACGTGTGCCTGCGATCCTGGCTACCG
GGGCAAGTATTGTCGCGAGCCATGCCCCGCTGGATTCTATGGCCCGGGCTGTCGCCGTCGGTGTGGCCAA
TGCAAAGGCCAGCAGCCGTGCACGGTAGTCGAAGGCCGCTGTCTGACATGCGAGCCCGGCTGGAACGGAA
CCAAATGTGACCAACCCTGCGCCACCGGTTTCTACGGCGAAGGTTGTGGCCACCGCTGCCCACCCTGCCG
CGACGGGCATGCCTGCAACCATGTCACCGGCAAGTGTACGCACTGCAATGCGGGCTGGATCGGCGACCGG
TGCGAGACTAAGTGCAGTAATGGCACTTACGGTGAGGACTGTGCCTTCGTGTGCTCTGATTGCGGCAGCG
GCCACTGTGACTTCCAGTCCGGGCGCTGCCTTTGCAGCCCTGGTGTTCACGGACCTCACTGTAATGTAAC
TTGCCCGGCCGGGCTCCACGGCGTGGACTGCGCCCAGGCCTGCAGCTGTCACGAGGAATCATGCGACCCG
GTCACCGGTGCCTGCCACCTGGAGACCAATCAGCGCAAAGGTGTGATGGGCGCGGGCGCTCTGCTCACGC
TGCTCCTCGGCCTGCTGCTCTCGCTGCTCGGTTGTTGCTGCGCCTGCCGGGGCAAGGACTCGGCGCGCCG
GGAGCTCACCCTTGGAAGGAAGAAGGCGCCTCAACGTTTTTGTGGAAGCTTCAGCCGCATCAGCATGAAG
CTGCCCCGAATCCCGCTTCGCAGGCAGAAGCTGCCCAAAGTCGTAGTGGCCCATCATGACCTAGACAACA
CACTCAACTGCAGTTTTCTGGACCCACCCTCAGGGCTGGAGCAGCCCTCTCCATCATGGTCCTCCAGGGC
CTCCTTCTCATCATTCGACACCACAGATGAAGGCCCTGTGTACTGTGTGCCCCACGAGGAAGCGACTGCC
GACAGCCGAGACCTGGAAGCGACTGCCGCTCTCACTGAGGTGGCCGCTGTGTCCTTAGAGCCCACGGGCA
CCTCGACGCCCGGGGAGGAGGCAGCGGTCCTCCCTGCATCCTCAGACAGCGAGCGCTCCGCATCAAGCGT
GGAGGGGCCGAGCGGGGCGCTGTACGCGCGTGTGGCCCGGCGCGAGGCCCGGCCGGCCCGGACCCGAAAT
GAGGCTGGGGGCTTGTCACTGTCCCCATCGCCCGAGCGCAGGAAGCCGCCACCACCAGACCCTGCCACCA
AGCCTAAGGTGTCCTGGATCCACGGCAAGCACAGCGCCGCTGCCGCTGCACCGTCGCCTCCGCCTGCAGG
CCGCAAGGCTGCGCCGAGCCCTAGCGGGAGGAAACGGACCCCCAGCAACTCGTCGGTGCAGCCCCCCGGA
CTGACCGAGGAGGCCCCCGGCCCGGCTTCACCCACGCCACCCCGCGCCCGAGCGCGCGGCCGCGGCCTGG
GGCTCTCGGAGCCAACGGACGCGGGAGGTCCCCCGCGCAGCGCGCCCGAGGCCGCCTCTATGCTGGCAGC
TGAGCTGCGCGACAAGACTCGCAGCTTAGGCCGCGCCGAGAAGCCGCCGCCGCCGCAGAAGGCCAAGCGC
TCCGTGCTCCCCGCCGCGACGGTCCGCACAGCCTCGGCGTCCGAGGCCTCGGGGTCAGAGAAGGCGGCGG
CCAGCGCACCTGCGCCCGAGACCCCTCGGAAGAAAACCCCCATCCAGAAACCGCCTCGGAAGAAGAGCAG
GGAGGCAGCGGGGGAGCCGAGTAGGGCGGGCACGGCCCCCGGAGCTTCCTAA

Translation (833 aa):
MEGAGSRGAGPARRQGARGLGLLLLLWLLPGLAAPQDLNPRGRNVCRTPGSQVLTCCAGWRQLGDECGIA
VCEGNSTCSENEVCVRPGECRCRHGYFGANCDTKCPRQFWGPDCKERCSCHPHGQCEDVTGQCTCHARRW
GARCEHACQCQHGTCHPRSGACRCEPGWWGAQCASACYCSATSRCDPQTGACLCHVGWWGRSCNNQCACN
SSPCEQQSGRCQCRERMFGARCDRYCQCSHGRCHPVDGTCACDPGYRGKYCREPCPAGFYGPGCRRRCGQ
CKGQQPCTVVEGRCLTCEPGWNGTKCDQPCATGFYGEGCGHRCPPCRDGHACNHVTGKCTHCNAGWIGDR
CETKCSNGTYGEDCAFVCSDCGSGHCDFQSGRCLCSPGVHGPHCNVTCPAGLHGVDCAQACSCHEESCDP
VTGACHLETNQRKGVMGAGALLTLLLGLLLSLLGCCCACRGKDSARRELTLGRKKAPQRFCGSFSRISMK
LPRIPLRRQKLPKVVVAHHDLDNTLNCSFLDPPSGLEQPSPSWSSRASFSSFDTTDEGPVYCVPHEEATA
DSRDLEATAALTEVAAVSLEPTGTSTPGEEAAVLPASSDSERSASSVEGPSGALYARVARREARPARTRN
EAGGLSLSPSPERRKPPPPDPATKPKVSWIHGKHSAAAAAPSPPPAGRKAAPSPSGRKRTPSNSSVQPPG
LTEEAPGPASPTPPRARARGRGLGLSEPTDAGGPPRSAPEAASMLAAELRDKTRSLGRAEKPPPPQKAKR
SVLPAATVRTASASEASGSEKAAASAPAPETPRKKTPIQKPPRKKSREAAGEPSRAGTAPGAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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