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Report for CCDS15479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15479.1 Public Mus musculus 1 Mpz 23 108 98 CCDS HistoryNCBI Gene:17528Re-query CCDS DB by CCDS ID:15479.1Re-query CCDS DB by GeneID:17528See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15479.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070758.9 ENSMUSP00000066701.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070758.9Link to Ensembl Protein Viewer:ENSMUSP00000066701.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000070758Re-query CCDS DB by Protein ID:ENSMUSP00000066701
Original member Current member EBI ENSMUST00000111334.1 ENSMUSP00000106966.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111334.1Link to Ensembl Protein Viewer:ENSMUSP00000106966.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111334Re-query CCDS DB by Protein ID:ENSMUSP00000106966
Original member Current member EBI ENSMUST00000238940.1 ENSMUSP00000159043.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238940.1Link to Ensembl Protein Viewer:ENSMUSP00000159043.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238940Re-query CCDS DB by Protein ID:ENSMUSP00000159043
Original member Current member NCBI NM_001315499.1 NP_001302428.1 Accepted alive Link to Nucleotide Sequence:NM_001315499.1Link to Protein Sequence:NP_001302428.1Re-query CCDS DB by Nucleotide ID:NM_001315499Re-query CCDS DB by Protein ID:NP_001302428Link to BLAST:NP_001302428.1
Original member Current member NCBI NM_008623.5 NP_032649.2 Accepted alive Link to Nucleotide Sequence:NM_008623.5Link to Protein Sequence:NP_032649.2Re-query CCDS DB by Nucleotide ID:NM_008623Re-query CCDS DB by Protein ID:NP_032649Link to BLAST:NP_032649.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001302428.1 248 P27573 248 99.5968% 0 1
NP_032649.2 248 P27573 248 99.5968% 0 1

Chromosomal Locations for CCDS 15479.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171155582 171155648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171158361 171158527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171158753 171158966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171159498 171159633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171159774 171159834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171159942 171160043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGGCTCCCGGGGCTCCCTCCTCCAGCCCCAGCCCTATCCTGGCTGCCCTGCTCTTCTCTTCTTTGGTGC
TCTCTCCAGCCCTGGCCATTGTGGTTTACACGGACAGGGAAATCTATGGTGCCGTGGGCTCCCAGGTGAC
CCTGCACTGCTCCTTCTGGTCCAGTGAATGGGTCTCAGATGACATCTCTTTTACCTGGCGCTACCAGCCT
GAAGGGGGCCGAGATGCCATTTCGATCTTCCACTATGCCAAGGGACAACCTTACATCGATGAGGTGGGGA
CCTTCAAAGAGCGCATCCAGTGGGTAGGGGACCCTCGCTGGAAGGATGGCTCCATTGTCATACACAACCT
AGACTACAGTGACAACGGCACTTTCACATGTGATGTCAAAAACCCACCGGACATAGTGGGCAAGACCTCT
CAGGTCACGCTCTATGTCTTTGAAAAAGTGCCCACTAGGTATGGGGTGGTGTTGGGAGCAGTGATCGGGG
GCATCCTCGGGGTGGTGCTGTTGCTGCTGTTGCTCTTCTACCTGATTCGGTACTGCTGGCTGCGCAGGCA
GGCTGCCCTGCAGAGAAGGCTCAGTGCCATGGAGAAGGGGAGATTTCACAAATCTTCGAAGGACTCCTCG
AAGCGAGGGCGGCAGACGCCAGTGCTGTATGCCATGCTGGACCACAGCCGAAGCACCAAAGCTGCCAGTG
AGAAGAAATCAAAAGGGCTGGGGGAGTCTCGCAAGGATAAGAAATAG

Translation (248 aa):
MAPGAPSSSPSPILAALLFSSLVLSPALAIVVYTDREIYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQP
EGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPRWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTS
QVTLYVFEKVPTRYGVVLGAVIGGILGVVLLLLLLFYLIRYCWLRRQAALQRRLSAMEKGRFHKSSKDSS
KRGRQTPVLYAMLDHSRSTKAASEKKSKGLGESRKDKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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