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Report for CCDS26576.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26576.1 Public Mus musculus 13 Golm1 23 108 98 CCDS HistoryNCBI Gene:105348Re-query CCDS DB by CCDS ID:26576.1Re-query CCDS DB by GeneID:105348See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26576.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022039.6 ENSMUSP00000022039.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022039.6Link to Ensembl Protein Viewer:ENSMUSP00000022039.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022039Re-query CCDS DB by Protein ID:ENSMUSP00000022039
Original member Current member EBI ENSMUST00000095739.9 ENSMUSP00000093410.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095739.9Link to Ensembl Protein Viewer:ENSMUSP00000093410.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000095739Re-query CCDS DB by Protein ID:ENSMUSP00000093410
Original member Current member NCBI NM_001035122.2 NP_001030294.1 Accepted alive Link to Nucleotide Sequence:NM_001035122.2Link to Protein Sequence:NP_001030294.1Re-query CCDS DB by Nucleotide ID:NM_001035122Re-query CCDS DB by Protein ID:NP_001030294Link to BLAST:NP_001030294.1
Original member Current member NCBI NM_027307.4 NP_081583.3 Accepted alive Link to Nucleotide Sequence:NM_027307.4Link to Protein Sequence:NP_081583.3Re-query CCDS DB by Nucleotide ID:NM_027307Re-query CCDS DB by Protein ID:NP_081583Link to BLAST:NP_081583.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001030294.1 393 Q91XA2 393 100% 0 0
NP_081583.3 393 Q91XA2 393 100% 0 0

Chromosomal Locations for CCDS 26576.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 59637292 59637401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59638305 59638412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59640120 59640341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59642243 59642387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59645093 59645222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59649563 59649665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59650696 59650750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59664198 59664377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 59665527 59665655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1182 nt):
ATGATGGGATTGGGGAATGGGCGTCGCAGCATGAAGTCTCCGCCCCTTATCCTGGCTGCCCTGGTGGCCT
GTGTTATTGTGCTAGGCTTCAACTACTGGATTGCTAGCTCGAGAAGCGTGGAACTCCAGACGCGCATTGT
AGAGCTGGAAGGCCGGGTCCGCAGGGCGGCTGCAGAGAGAGGTGCTGTAGAGCTCAAGAAGAATGAGTTC
CAGGGCGAGCTGCAGAAGCAGAGAGAGCAACTTGACAGGATCCAGTCTAGCCACAGCTTCCAGCTGGAGA
ATGTCAACAAGCTACACCAGGATGAGAAGGCGGTTTTAGTGAATAACATCACCACAGGCGAGAAGCTCAT
TCGAGACCTGCAAGACCAGTTGAAGGCACTGCAGAGGAGTTACAGCAGCCTGCAGCAGGATATCTTCCAA
TTCCAGAAGAACCAGACCAGCCTGGAGAAGAAGTTCTCCTATGACCTGAACCAGTGTATCAGCCAGATGA
CCGAGGTGAAGGAACAGTGTGACGAGCGGATAGAGGAGGTCATCAGAAAGCGAAACGAAGCACCGGGTTC
CAGAGACCTGGCTGAAACCAACAACCAACATCAGCAGGCCCTCAAGCCTCAGCCCAAGCTTCAGGAAGAA
GTCCCATCAGAGGAACAGATGCCACAAGAGAAAGGGGATGTGCCCAGAAACAAGTCCCAGATTCCAGCCC
CCAATTCAGAGAGCTTGGGTTTGAAGCCACAGGTGCAGAATGAGGAAACCAATGAGATTCAGGCTGTCGG
TGAGGAGCACCAACAGGCATCCATCCAAGGGCAGGCGGTGGCGGATGGCACTCGGGTAGGAGCTGAGAAA
CTCGATCAGCACACACAGCTACCAGCTGGCCTGTTGGCCAGGCCTGAGGAGGACTCTCAGTACCCTGAGC
GGGAGCAGCTTGTCATCCGGGATAGGCAGGAGCAGCAGCGTGCATCAGAGGAAGGGGGAGGCCAGAAGAA
CCCAGGAGATGAATACGACATGGATGAAAACGAAGCAGAATCTGAGAGGGAGAAGCAGGCAGCCCTTGCA
GGGAATGACAGAAATATAAATGTTCTTAATGCTGACGCTCAGAAGAGAGGCATAATAAATGTGCCCGTCG
GGAGTGAAAGGCAGAGCCACATTCTAAATCAAGTAGGCATTCATATTCCTCAACAAGCCTGA

Translation (393 aa):
MMGLGNGRRSMKSPPLILAALVACVIVLGFNYWIASSRSVELQTRIVELEGRVRRAAAERGAVELKKNEF
QGELQKQREQLDRIQSSHSFQLENVNKLHQDEKAVLVNNITTGEKLIRDLQDQLKALQRSYSSLQQDIFQ
FQKNQTSLEKKFSYDLNQCISQMTEVKEQCDERIEEVIRKRNEAPGSRDLAETNNQHQQALKPQPKLQEE
VPSEEQMPQEKGDVPRNKSQIPAPNSESLGLKPQVQNEETNEIQAVGEEHQQASIQGQAVADGTRVGAEK
LDQHTQLPAGLLARPEEDSQYPEREQLVIRDRQEQQRASEEGGGQKNPGDEYDMDENEAESEREKQAALA
GNDRNINVLNADAQKRGIINVPVGSERQSHILNQVGIHIPQQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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