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Report for CCDS15625.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15625.1 Public Mus musculus 1 Slc30a1 23 108 98 CCDS HistoryNCBI Gene:22782Re-query CCDS DB by CCDS ID:15625.1Re-query CCDS DB by GeneID:22782See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15625.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044954.6 ENSMUSP00000042410.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044954.6Link to Ensembl Protein Viewer:ENSMUSP00000042410.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000044954Re-query CCDS DB by Protein ID:ENSMUSP00000042410
Original member Current member NCBI NM_009579.3 NP_033605.1 Accepted alive Link to Nucleotide Sequence:NM_009579.3Link to Protein Sequence:NP_033605.1Re-query CCDS DB by Nucleotide ID:NM_009579Re-query CCDS DB by Protein ID:NP_033605Link to BLAST:NP_033605.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033605.1 503 Q60738 503 100% 0 0

Chromosomal Locations for CCDS 15625.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 191907007 191907613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 191908851 191909755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGGGCTGCTGGGGCCGCAACCGCGGCCGGCTGCTGTGCATGCTGCTGCTGACCTTCATGTTCATGGTGC
TGGAGGTGGTGGTGAGCCGGGTGACCGCGTCGCTCGCCATGCTGTCCGACTCCTTCCACATGCTGTCGGA
CGTGCTGGCGCTCGTAGTGGCGCTGGTGGCCGAGCGCTTCGCCCGGAGGACTCACGCCACGCAGAAGAAC
ACGTTCGGCTGGATCCGCGCTGAGGTGATGGGCGCACTGGTGAACGCCATCTTCCTCACGGGGCTGTGCT
TCGCCATCCTGCTGGAAGCCGTCGAGCGCTTCATCGAGCCGCATGAGATGCAGCAGCCGCTCGTGGTGCT
GAGCGTCGGCGTGGCGGGGCTGCTGGTCAACGTGCTGGGGCTCTGTCTGTTCCACCATCACAGCGGCGAG
GGCCAGGGCGCGGGCCACGGCCACTCGCACGGCCACGGCCACGGCCACCTCGCCAAGGGCGCGCGCAAGG
CGGGCCGCGCGGGGGTCGAGGCGGGCGCGCCGCCGGGCCGGGCGCCGGACCAGGAGGAGACCAACACGCT
GGTGGCCAACACCAGCAATTCCAACGGGCTGAAGGCGGACCAGGCAGAGCCAGAAAAATTGAGAAGTGAT
GACCCAGTGGATGTACAAGTAAATGGGAATCTCATCCAGGAGTCTGACAATCTGGAAGCGGAAGACAACA
GGGCTGGGCAGCTGAATATGCGAGGAGTGTTTCTGCACGTCCTTGGAGATGCCTTGGGCTCCGTGATCGT
GGTCGTGAATGCCTTGGTCTTTTACTTTAACTGGAAGGGTTGTACTGAAGACGACTTTTGTACGAACCCG
TGTTTTCCTGATCCCTGCAAATCGTCTGTAGAGATAATTAACAGCACCCAGGCCCCGATGCGTGACGCTG
GCCCATGCTGGGTGCTCTACCTAGACCCAACCCTTTGTATTATAATGGTTTGTATACTTCTGTACACGAC
TTACCCATTGCTCAAGGAGTCTGCTCTCATTCTTCTACAAACTGTCCCTAAGCAAATCGATATCAAACAC
TTGGTGAAAGAGCTTCGAGACGTTGACGGCGTTGAGGAAGTCCATGAGCTACATGTCTGGCAGCTGGCGG
GAAGCAGGATCATCGCCACTGCCCACATAAAATGTGAGGACCCCGCTTCCTACATGCAGGTGGCCAAGAC
CATTAAAGATGTCTTTCATAATCATGGAATCCACGCTACCACCATCCAGCCTGAATTCGCTAGCGTCGGC
TCTAAGTCAAGTGTGCTCCCGTGTGAGCTCGCCTGCAGAACTCAGTGTGCCCTGAAGCAGTGCTGCGGGA
CACGGCCACAGGTGCATTCTGGGAAGGATGCAGAGAAGGCGCCAACAGTTAGCATTTCTTGTTTAGAACT
CAGTGAGAATCTAGAGAAGAAGGCCAGGAGGACTAAAGCTGAAGGCAGTCTCCCTGCTGTGGTGATAGAG
ATTAAAAACGTGCCAAACAAACAGCCCGAATCATCTTTGTGA

Translation (503 aa):
MGCWGRNRGRLLCMLLLTFMFMVLEVVVSRVTASLAMLSDSFHMLSDVLALVVALVAERFARRTHATQKN
TFGWIRAEVMGALVNAIFLTGLCFAILLEAVERFIEPHEMQQPLVVLSVGVAGLLVNVLGLCLFHHHSGE
GQGAGHGHSHGHGHGHLAKGARKAGRAGVEAGAPPGRAPDQEETNTLVANTSNSNGLKADQAEPEKLRSD
DPVDVQVNGNLIQESDNLEAEDNRAGQLNMRGVFLHVLGDALGSVIVVVNALVFYFNWKGCTEDDFCTNP
CFPDPCKSSVEIINSTQAPMRDAGPCWVLYLDPTLCIIMVCILLYTTYPLLKESALILLQTVPKQIDIKH
LVKELRDVDGVEEVHELHVWQLAGSRIIATAHIKCEDPASYMQVAKTIKDVFHNHGIHATTIQPEFASVG
SKSSVLPCELACRTQCALKQCCGTRPQVHSGKDAEKAPTVSISCLELSENLEKKARRTKAEGSLPAVVIE
IKNVPNKQPESSL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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