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Report for CCDS84935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84935.1 Public Mus musculus 5 Sgsm1 23 108 98 CCDS HistoryNCBI Gene:52850Re-query CCDS DB by CCDS ID:84935.1Re-query CCDS DB by GeneID:52850See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84935.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057209.11 ENSMUSP00000084106.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057209.11Link to Ensembl Protein Viewer:ENSMUSP00000084106.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000057209Re-query CCDS DB by Protein ID:ENSMUSP00000084106
Original member Current member NCBI NM_001309528.1 NP_001296457.1 Accepted alive Link to Nucleotide Sequence:NM_001309528.1Link to Protein Sequence:NP_001296457.1Re-query CCDS DB by Nucleotide ID:NM_001309528Re-query CCDS DB by Protein ID:NP_001296457Link to BLAST:NP_001296457.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001296457.1 806 Q8BPQ7-2 806 100% 0 0

Chromosomal Locations for CCDS 84935.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 113245005 113245093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113250873 113251040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113252998 113253094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113255252 113255361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113258791 113258873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113260049 113260173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113263249 113263836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113265879 113265947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113266287 113266469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113268701 113268829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113273579 113273724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113274292 113274356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113276034 113276172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113279133 113279265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113279457 113279620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 113280327 113280459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2421 nt):
ATGCTGGGACAAGTAGGTCTTGGTGACCTCTGGCTTCCCACAGTCTCCCTCACTTCCCCTTCCAGTGTCT
ACTGGGACTACGCTGTGACCATCCGCTTAGAGGAGATAGTTTACCTGCACTGCCATCAACAAGTGGACAG
CGGCGGGACTGTCGTGCTGGTGAGCCAGGATGGAATCCAGAGGCCACCCTTCCGCTTCCCCAAGGGCGGG
CACCTGCTACAGTTCCTCTCCTGTCTGGAGAATGGGCTGCTTCCGCACGGGCAGCTGGACCCGCCGCTTT
GGTCACAGCGAGGAAAGGGGAAGGTATTTCCTAAGTTGCGCAAGCGCAGCCCACAGGGGTCCTCCGAGTC
CACGTCTTCAGACAAGGAGGACGACGAAGCCACGGATTACGTGTTCCGCATCATCTACCCTGGCACGCAG
TCTGAATTCGTGCCCCAGGACCTAATGGATGTCTCTATGAACAACCTTCCACCCCTATGGCAACCCAGTC
CTCGGAAGTCCTCCTGCTCTTCCTGTTCACAAAGCGGCTCAGCTGACGGCGGCTCAACCAATGGCTGTAA
CCATGAGAGGGCCCCACTGAAACTGCTGTGTGATAACATGAAGTACCAGATCCTCTCCAGAGCCTTCTAT
GGATGGCTCGCCTACTGCAGACACCTGTCCACCGTGAGGACCCACCTGTCAGCCCTGGTCAATCACATGA
TCGTGTCTCCAGACCTGCCCTGTGACGCTGGGCAAGGGTTGACAGCCAGCATCTGGGAAAAATACATCCA
GGACAGCACGACCTACCCGGAGCAGGAGCTGCTGCGTCTCATCTACTATGGAGGTGTCCAGCCTGAGATC
CGCAGGGCAGTGTGGCCCTTCCTCCTCGGCCACTACCAGTTTGGGATGACAGAGATGGAGAGGAAAGAGG
TAGACGAACAGATCCATGCCTGCTACGCACAAACCATGTCGGAGTGGCTGGGCTGTGAAGCTATCGTGAG
ACAGAGGGAGCGGGAGTCCCACGCGGCTGCCCTGGCCAAGTGCTCTTCAGGAGCCAGCCTGGACAGCCAC
CTTCACCGGATGCTGCACCGGGACTCCACCATCAGCAATGAGTCATCCCAGAGCTGCAGCTCAGGCCGCC
AGAACCTCCGACTGCAGAGCGACTCCAGCAGCAGCACACAGGTATTTGAGTCTGTGGATGAGGTGGAGCA
GACAGAGGCAGAAGGCAGGTCAGAAGAAAAACATCCCAAAATCCCCAATGGGAACCCAGCCAACGGCACT
TGCTCCCCAGACTCCGGACACCCTTCCTCCCACAACTTCTCCTCTGGTCTCTCCGAGCACTCTGAGCCCA
GTCTTAGCACTGAAGACAGCGTCTTGGATGCCCAACGCAGCCTTCCAGCTGTGTTTCGGCCTGGGGACAG
CAGCGTGGAAGATGGGCAGAGCAGCGAAGCCACCACATCCCGGGACGAGGCCCCTCGGGAGGAGCTGGCC
GTGCAAGATAGCCTTGAGAGTGACCTCCTTGCCAACGAGAGCTTGGAGGAGTTCATGTCTATCCCTGGCA
GCCTGGACGTGGCCCTACCTGAGAAGGATGGCGCGGTGATGGACGGCTGGCCCGGTGAGGCGGACAAGCC
CAGTCGGGCTGACAGTGAGGACAACCTCTCAGAAGAGCCTGAGATGGAGAGCCTGTTCCCTGCCCTGGCT
TCTCTGGCTGTGACCTCCTCTGCCAATAACGAGGCATCCCCTGTGTCCTCCAGTGGAGTCACCTATTCTC
CAGAACTACTGGACCTGTACACCGTGAACCTGCACCGCATTGAGAAAGATGTGCAGAGGTGTGACCGCAG
CTACTGGTACTTCACAGCAGCCAACCTGGAGAAGCTGAGGAACATCATGTGCAGCTATATCTGGCAGCAC
ATCGAGATCGGCTACGTCCAGGGCATGTGTGACCTCCTGGCCCCGTTGCTGGTCATCCTGGATGATGAGG
CCCTGGCCTTCAGTTGCTTCACGGAGCTGATGAAGAGGATGAACCAAAACTTCCCCCATGGAGGCGCCAT
GGATACGCACTTCGCCAACATGAGGTCTCTGATCCAGATCCTGGACTCCGAGCTCTTCGAGCTGATGCAT
CAGAACGGCGATTACACCCACTTCTACTTTTGCTACCGCTGGTTCCTGCTGGATTTCAAACGAGAGCTGG
TCTATGATGACGTCTTCTCCGTGTGGGAAACTATCTGGGCTGCTAAGCACGTGTCCTCCGCCCACTACGT
GCTGTTCATCGCGCTGGCGCTGGTGGAGGTCTACAGAGACATCATCCTGGAGAACAATATGGACTTCACT
GACATTATCAAGTTCTTCAACGAAATGGCTGAGCGGCACAACGCCAAGCAGATTCTGCAGCTCGCCCGGG
ACCTCGTGCATAAGGTGCAGATTCTAATTGAGAACAAGTGA

Translation (806 aa):
MLGQVGLGDLWLPTVSLTSPSSVYWDYAVTIRLEEIVYLHCHQQVDSGGTVVLVSQDGIQRPPFRFPKGG
HLLQFLSCLENGLLPHGQLDPPLWSQRGKGKVFPKLRKRSPQGSSESTSSDKEDDEATDYVFRIIYPGTQ
SEFVPQDLMDVSMNNLPPLWQPSPRKSSCSSCSQSGSADGGSTNGCNHERAPLKLLCDNMKYQILSRAFY
GWLAYCRHLSTVRTHLSALVNHMIVSPDLPCDAGQGLTASIWEKYIQDSTTYPEQELLRLIYYGGVQPEI
RRAVWPFLLGHYQFGMTEMERKEVDEQIHACYAQTMSEWLGCEAIVRQRERESHAAALAKCSSGASLDSH
LHRMLHRDSTISNESSQSCSSGRQNLRLQSDSSSSTQVFESVDEVEQTEAEGRSEEKHPKIPNGNPANGT
CSPDSGHPSSHNFSSGLSEHSEPSLSTEDSVLDAQRSLPAVFRPGDSSVEDGQSSEATTSRDEAPREELA
VQDSLESDLLANESLEEFMSIPGSLDVALPEKDGAVMDGWPGEADKPSRADSEDNLSEEPEMESLFPALA
SLAVTSSANNEASPVSSSGVTYSPELLDLYTVNLHRIEKDVQRCDRSYWYFTAANLEKLRNIMCSYIWQH
IEIGYVQGMCDLLAPLLVILDDEALAFSCFTELMKRMNQNFPHGGAMDTHFANMRSLIQILDSELFELMH
QNGDYTHFYFCYRWFLLDFKRELVYDDVFSVWETIWAAKHVSSAHYVLFIALALVEVYRDIILENNMDFT
DIIKFFNEMAERHNAKQILQLARDLVHKVQILIENK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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