NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30062.1 Public Mus musculus X Slc25a5 23 108 98 CCDS HistoryNCBI Gene:11740Re-query CCDS DB by CCDS ID:30062.1Re-query CCDS DB by GeneID:11740See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30062.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000016463.3 ENSMUSP00000016463.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000016463.3Link to Ensembl Protein Viewer:ENSMUSP00000016463.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000016463Re-query CCDS DB by Protein ID:ENSMUSP00000016463
Original member Current member NCBI NM_007451.4 NP_031477.1 Accepted alive Link to Nucleotide Sequence:NM_007451.4Link to Protein Sequence:NP_031477.1Re-query CCDS DB by Nucleotide ID:NM_007451Re-query CCDS DB by Protein ID:NP_031477Link to BLAST:NP_031477.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031477.1 298 P51881 298 100% 0 0

Chromosomal Locations for CCDS 30062.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 36795731 36795841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36796843 36797329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36797736 36797876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 36798387 36798544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGACAGATGCCGCTGTGTCCTTCGCCAAGGACTTCTTGGCCGGTGGAGTGGCCGCAGCCATCTCCAAGA
CAGCGGTAGCACCCATCGAGAGGGTCAAGCTGCTGCTGCAGGTGCAGCATGCCAGCAAGCAAATCACGGC
AGATAAGCAATACAAGGGCATCATAGACTGCGTGGTTCGTATCCCCAAGGAACAGGGAGTCCTGTCCTTC
TGGCGTGGGAACCTGGCCAATGTCATCAGATACTTCCCCACCCAGGCTCTCAACTTTGCCTTCAAAGATA
AATACAAGCAGATCTTTCTGGGTGGTGTGGACAAGAGGACCCAGTTCTGGCGCTACTTTGCAGGGAACCT
GGCATCAGGTGGTGCCGCTGGGGCTACATCCTTGTGCTTTGTGTACCCTCTTGATTTTGCCCGTACCCGT
CTAGCAGCTGATGTGGGCAAAGCTGGAGCTGAAAGGGAATTCAAAGGCCTTGGTGACTGCCTGGTTAAGA
TCTACAAATCTGATGGGATTAAGGGCCTGTACCAAGGCTTTAATGTGTCAGTACAGGGCATTATCATCTA
CCGAGCTGCCTACTTTGGTATCTATGACACTGCAAAGGGAATGCTCCCAGATCCCAAGAATACTCACATC
TTCATCAGCTGGATGATTGCACAGTCTGTCACTGCTGTCGCTGGCCTGACTTCCTATCCTTTTGACACGG
TTCGCCGTCGTATGATGATGCAGTCTGGACGCAAAGGAACTGATATCATGTACACAGGCACGCTTGACTG
CTGGCGGAAGATCGCGCGCGATGAAGGGAGCAAGGCTTTTTTCAAGGGCGCATGGTCCAACGTTCTCAGA
GGCATGGGTGGCGCCTTTGTGCTTGTCTTGTATGATGAGATCAAGAAATACACATAA

Translation (298 aa):
MTDAAVSFAKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQITADKQYKGIIDCVVRIPKEQGVLSF
WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKRTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTR
LAADVGKAGAEREFKGLGDCLVKIYKSDGIKGLYQGFNVSVQGIIIYRAAYFGIYDTAKGMLPDPKNTHI
FISWMIAQSVTAVAGLTSYPFDTVRRRMMMQSGRKGTDIMYTGTLDCWRKIARDEGSKAFFKGAWSNVLR
GMGGAFVLVLYDEIKKYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH