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Report for CCDS25159.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25159.1 Public Mus musculus 11 Slfn3 23 108 98 CCDS HistoryNCBI Gene:20557Re-query CCDS DB by CCDS ID:25159.1Re-query CCDS DB by GeneID:20557See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25159.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019130.7 ENSMUSP00000019130.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019130.7Link to Ensembl Protein Viewer:ENSMUSP00000019130.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019130Re-query CCDS DB by Protein ID:ENSMUSP00000019130
Original member Current member NCBI NM_011409.1 NP_035539.1 Accepted alive Link to Nucleotide Sequence:NM_011409.1Link to Protein Sequence:NP_035539.1Re-query CCDS DB by Nucleotide ID:NM_011409Re-query CCDS DB by Protein ID:NP_035539Link to BLAST:NP_035539.1

Chromosomal Locations for CCDS 25159.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83212674 83213613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83214488 83215101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGAAAGATATTCAACTGAGAAGAAAAGAAGCCAAAAGTATATTACAGGCTGTGTGCACCCTGCTGAATT
CTGGAGGGGGCGTGGTCAAGGCTCACATTAAAAATCAAAACTACAGCTTCACCAGAGATGGAATGGGACT
GGATTTGGTAAATTCCTTACCCGGTATCATGCACCTTCCTCATGACTATCTAGACTTCATGCAGCACAAA
GACTACTTTTTCGTTTTTGTGAAACCATTGAAGCCGAATCAGAAAGGGCCGGGGATCACCACCTTGAAAA
CGAACTTGTACAGAAGAATCAACTCAATCTCAGATGAAGTGAAAGTAGCGAATGCAGTGCAGCTCCTCAA
ATCCAGGACAGATCCCGAAGAGAAAGCAGAATCCAGACCAAGTTCACCTGGGAAAATCGTCTGTAATGAA
ACACTAAATGAATGTCTTTCCTTATTTAACAGAGACTGGCTTGCCTATGAGGAGACATTCTGTTTCACTA
AATCCATACATGCTGAAGTAAAATTGACTCCTAAGGAAAAGATTTTTCCTAAGGAAAAGATTTTAGAGCT
CCTCCCTCAAACTGTTTCTGCATTTGCAAACACTGATGGGGGATTTTTGTTCATTGGCTTGGATGGCAAA
ACGCAGCAAATTATTGGTTTTGAAGCAGAGAAGAGCAATCTCGTGCTTCTAGAGAGTGAAATAGAAAAGT
GCATCCAACAGCTGCCTGTCACTCACTTCTGTGGGGAGAAGGAGAAGATCAAGTACACGTGCAAATTCAT
CGAAGTGCGCAAATCCGGAGCTGTGTGTGCATATGTGTGTGCGCTCAGAGTGGAGAGGTTCTGCTGTGCA
GTGTTCGCTGCAGAGCCCGAGTCCTGGCACGTGGAAGGTGGCTGTGTGAAGAGGTTTACCACAGAGGAAT
GGGTGAAGCGCCAGATGGATGCCACTGCAGTGATGCCTGGAAAGGTGATATGCTGTCCAGAAGCCCTCTA
TATGAAACCATTCTCACAACATGAAGGCTATGAGCACTTAGTCCGGACAGAATTGGGCTCCCTGCTTAAA
GGAACACTGGTTATCTCCAAGAGCTGGGCTTTGGATCTGGGCTTGCAAGAGAAGCAGGAAGTTATCTGGG
ATGTGCTTCATATTTCCCAGGGCAGTCTCCTGACCCTGTATGTCTTTGTCCAGGGAGATGAGAACCTGGA
AGGCAACAGCAGTCTTCTTGGGGAACTAGGCGCCGAGTTAAAGGGCTATTATAAACAAATTGCCCTAACA
TTAAAGCAGATGTTGTTAAACCATTGTGGTTACACTGCGGAAATAGGTATTATAGTAAAGATAACATACT
TGGGTCATAAGACAATGTGTCTTTATGACACAAGCACAAAAATACGTTACCCCCAAAAATATTATCTGTC
GGCCAAGGCAGTAAAGGACTTAGAAAAAGCTCTCGTTGAAATCTTAGGAAGTTATGAGTCTTTCTACAGT
TTACCCAGGAGAAACTGGGATTCTTTTATGTCTGCATTTTTAAATGTGGGAAGTTATATAGTCCCTGTTT
TGAGAAATGTATGA

Translation (517 aa):
MKDIQLRRKEAKSILQAVCTLLNSGGGVVKAHIKNQNYSFTRDGMGLDLVNSLPGIMHLPHDYLDFMQHK
DYFFVFVKPLKPNQKGPGITTLKTNLYRRINSISDEVKVANAVQLLKSRTDPEEKAESRPSSPGKIVCNE
TLNECLSLFNRDWLAYEETFCFTKSIHAEVKLTPKEKIFPKEKILELLPQTVSAFANTDGGFLFIGLDGK
TQQIIGFEAEKSNLVLLESEIEKCIQQLPVTHFCGEKEKIKYTCKFIEVRKSGAVCAYVCALRVERFCCA
VFAAEPESWHVEGGCVKRFTTEEWVKRQMDATAVMPGKVICCPEALYMKPFSQHEGYEHLVRTELGSLLK
GTLVISKSWALDLGLQEKQEVIWDVLHISQGSLLTLYVFVQGDENLEGNSSLLGELGAELKGYYKQIALT
LKQMLLNHCGYTAEIGIIVKITYLGHKTMCLYDTSTKIRYPQKYYLSAKAVKDLEKALVEILGSYESFYS
LPRRNWDSFMSAFLNVGSYIVPVLRNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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