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Report for CCDS18180.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18180.1 Public Mus musculus 4 Smc2 23 108 98 CCDS HistoryNCBI Gene:14211Re-query CCDS DB by CCDS ID:18180.1Re-query CCDS DB by GeneID:14211See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18180.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102915.9 ENSMUSP00000099979.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102915.9Link to Ensembl Protein Viewer:ENSMUSP00000099979.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102915Re-query CCDS DB by Protein ID:ENSMUSP00000099979
Original member Current member EBI ENSMUST00000117280.7 ENSMUSP00000113940.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117280.7Link to Ensembl Protein Viewer:ENSMUSP00000113940.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117280Re-query CCDS DB by Protein ID:ENSMUSP00000113940
Original member Current member NCBI NM_001301412.1 NP_001288341.1 Accepted alive Link to Nucleotide Sequence:NM_001301412.1Link to Protein Sequence:NP_001288341.1Re-query CCDS DB by Nucleotide ID:NM_001301412Re-query CCDS DB by Protein ID:NP_001288341Link to BLAST:NP_001288341.1
Original member Current member NCBI NM_008017.4 NP_032043.3 Accepted alive Link to Nucleotide Sequence:NM_008017.4Link to Protein Sequence:NP_032043.3Re-query CCDS DB by Nucleotide ID:NM_008017Re-query CCDS DB by Protein ID:NP_032043Link to BLAST:NP_032043.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288341.1 1191 Q8CG48 1191 100% 0 0
NP_032043.3 1191 Q8CG48 1191 100% 0 0

Chromosomal Locations for CCDS 18180.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 52440256 52440423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52442253 52442402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52445952 52446074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52447713 52447751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52449321 52449431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52449611 52449655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52450820 52451053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52451228 52451377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52457262 52457495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52458415 52458574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52459021 52459138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52460158 52460296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52461050 52461169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52462803 52463007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52465933 52466068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52467790 52467914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52469772 52469965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52470766 52470909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52474921 52475115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52476644 52476844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52478396 52478512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52481670 52481830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52484040 52484187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 52486497 52486655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3576 nt):
ATGTATGTTAAATCAATCATTCTCGAAGGATTCAAGTCCTATGCACAGAGGACTGAAGTCAATGGTTTTG
ACCCCCTCTTCAATGCGATCACTGGTTTAAATGGTAGTGGAAAATCCAACATATTGGACTCCATATGCTT
TCTCCTAGGCATCTCCAACCTGTCCCAGGTGCGGGCTTCAAATTTACAAGATCTCGTTTATAAAAATGGA
CAGGCTGGGATTACCAAAGCCTCTGTTTCAATCACTTTTGATAATTCTGACAAAAAGCAGAGTCCGTTGG
GATTTGAAGCTCATGATGAAATCACAGTAACAAGACAGGTGGTTATTGGTGGCAGAAATAAATACTTAAT
CAATGGAGTGAATGCCAACAACACCAGAGTCCAAGATCTCTTTTGTTCTGTGGGCCTGAATGTTAACAAC
CCTCACTTTCTCATCATGCAGGGCAGAATTACGAAAGTATTAAATATGAAACCACCAGAGATATTATCCA
TGATTGAAGAAGCTGCTGGAACCAGGATGTATGAGTACAAAAAAATAGCCGCCCAGAAAACTATAGAAAA
AAAGGAGGCTAAGCTGAAAGAAATAAAAACGATACTGGAAGAAGAGATTACTCCAACGATTCAAAAATTA
AAAGAGGAAAGATCTTCTTACTTGGAGTACCAGAAAGTAATGCGGGAGATAGAGCATCTGAGTCGTTTAT
ACATTGCCTATCAGTTTTTGCGGGCTGAAGACACCAAGGAACGCTCAGCTGGGGAGCTAAAGGAAATGCA
GGATAAAATAGTAAATCTTCAAGAAGTACTGTCAGAGAATGAAAAAAAAATAAAGGCTCTCAATTGTGAA
ATCGAAGAATTGGAGAGAAGAAAAGATAAGGAAACTGGAGGCAAACTCAAGTCTCTAGAGGATGCTTGTG
CAGAAGCCCAGCGAGTTAATACTAAGTCTCAAAGTGCATTTGACCTCAAGAAGAAAAACCTAGCTAGTGA
AGAAACCAAGCGCAAAGAGCTACAAAACAGTATGGCTGAGGATTCTAAAGCATTAGCAGCAAAGGAAAAA
GAAGTTAAGAAGATAACAGATGGACTGCATGGCCTTCAAGAAGCAAGCAATAAAGATGCTGAAGCTTTGG
CTGCTGCACAGCAGCACTTCAATGCTGTTTCTGCTGGCTTGTCCAGTAACGAAGATGGAGCAGAAGCAAC
TCTGGCTGGGCAGATGATAGCCTGTAAAAACGATATCAGCAAAGCTCAGACTGAGGCCAAGCAGGCTCAG
ATGAAGCTGAAACATGCCCAACAAGAACTAAAGAGTAAGCAAGCAGAGGTTAAGAAGATGGACAGTGGCT
ACAAGAAGGATCAAGACGCTTTTGAAGCTGTGAAAAAAGCTAAAGAAAAACTTGAAACTGAAATGAAGAA
GCTAAATTACGAAGAAAACAAAGAGGAAAAGCTTTTGGAAAAGCACAGGCAGCTGTCCCGTGACATCAAC
AACCTAAAAGGAAAACATGAAGCTCTCTTGGCCAAGTTTCCCAATCTTCAATTTGCATACAAGGACCCAG
AGAAGAACTGGAATCGAAATTCTGTGAAAGGACTTGTAGCTTCTCTGATAAATGTGAAAGATAATTCTAC
AGCCACAGCTCTGGAAGTGGTGGCTGGGGAACGACTCTACAATGTTGTAGTAGACACAGAGGTAACTGCT
AAGAAGCTACTAGAAAAGGGGGAGTTGAAGCGTCGATACACAATAATTCCTCTCAATAAGATTTCAGCCA
GATGTATTGCTCCTGAAACTCTGAGGGTCGCTCAGAATCTTGTTGGTCCTGACAATGTTCATGTAGCTCT
TTCCTTGGTTGACTATAAACCAGAACTTCAGAAAGGAATGGAATTTGTCTTTGGAACAACATTTGTTTGT
AACAATATGGATAATGCCAAAAAAGTGGCCTTTGATAAAAGGATAATGACCAGAACTGTAACCCTTGGGG
GTGATGTATTTGATCCTCATGGAACATTGAGTGGAGGTGCTAGGTCCCAGGCAGCTTCGATTTTAACCAA
GTTTCAAGAAGTCAAAGATGTTCAAGATGAGCTGAGGACCAAGGAGAATGAACTGCGCGCTCTAGAAGAG
GAGTTAGCAGGTCTTAAAAATGTTGCTGAAAAGTATCGCCAACTGAAACAGCAGTGGGAGATGAAGACAG
AGGAGGGAGACTTATTGCAAACTAAACTTCAGCAAAGCTCTTATCATAAGCAACAAGAAGAATTAGATGC
CCTTAAAAAAACCATTGAGGAAAGTGAGGAGACATTAAAAAGCACAAAAGAAATCCAAAAGAAAGCTGAA
GAAAAGTATGAAGCATTGGAGAATAAAATGAAAAATGCGGAAGCTGAAAGAGAGAAAGAACTGAAGGATG
CTCAGAAAAAACTAGATTGTGCCAAAACAAAGGCAGATGCATCTAGCAAGAAAATGAAAGAAAAACAACA
GGAGGTTGAAGCTATTACTCTAGAGCTGGAGGAGCTCAAAAGAGAGCATGCTTCTAATGAGCAGCAGCTT
GATGCCGTGAATGAAGCCATCAAAGCCTATGAAGGTCAGATTGAAAAAATGGCAGCTGAGGTCGCTAAAA
ATAAGGAATCAGTAAATAAAGCTCAAGACGAGCTGATGAAGCAAAAGCAAATAATAACAGCCCAGGACAA
CATAATTAAAGATAAATGTGCAGAAGTGGCGAAACACAATTTGCAAAACAATGAGTCTCAACTTAAAATT
AAGGAGTTGGACCACAGCATAAGCAAACATAAGCGGGAAGCGGATGATGCTGCTGCAAAGGTATCCAAAA
TGTTAAGTGATTATGATTGGATTAATGCTGAGAAACACCTATTTGGCCAACCTAATAGTGCCTATGATTT
CAAAACAAACAACCCCAAAGAAGCTGGCCAGAGACTTCAGAAGTTACAGGAAGTAAAAGAGAAACTAGGG
AGAAATGTCAACCTGAGAGCTATGAACGTGCTGACAGAAGCTGAAGAGCGGTATAATGATTTGATGAAGA
AGAAAAGAATTGTAGAAAATGACAAATCCAAAATCCTTGCAACTATAGAAGATCTTGACCAGAAGAAAAA
CCAGGCCCTAAATATTGCTTGGCAAAAGGTGAACAAAGACTTTGGCTCTATTTTTTCTACCCTTTTGCCT
GGTGCCAATGCTATGCTTGCACCACCAGAAGGGCAGACAGTTTTAGATGGTCTGGAGTTCAAGGTTGCCT
TAGGAAATACGTGGAAAGAAAACCTAACTGAGCTTAGTGGTGGTCAGAGGTCTCTAGTGGCTCTCTCACT
AATATTGTCCATGCTCCTCTTCAAACCTGCTCCAATTTATATCTTGGATGAGGTGGATGCGGCCTTGGAT
CTTTCTCATACCCAGAATATTGGGCAGATGCTGCGGACTCACTTCACACATTCTCAATTCATTGTGGTAT
CCCTCAAAGAAGGTATGTTCAACAATGCAAACGTTCTCTTCAAAACCAAGTTTGTGGATGGTGTTTCTAC
AGTAGCCAGATTTACGCAGAGTCAAGCTGGGAAGATTCCGAAGGAAGCAAAGTCCAGAGGAAAAGAACCC
AACTGA

Translation (1191 aa):
MYVKSIILEGFKSYAQRTEVNGFDPLFNAITGLNGSGKSNILDSICFLLGISNLSQVRASNLQDLVYKNG
QAGITKASVSITFDNSDKKQSPLGFEAHDEITVTRQVVIGGRNKYLINGVNANNTRVQDLFCSVGLNVNN
PHFLIMQGRITKVLNMKPPEILSMIEEAAGTRMYEYKKIAAQKTIEKKEAKLKEIKTILEEEITPTIQKL
KEERSSYLEYQKVMREIEHLSRLYIAYQFLRAEDTKERSAGELKEMQDKIVNLQEVLSENEKKIKALNCE
IEELERRKDKETGGKLKSLEDACAEAQRVNTKSQSAFDLKKKNLASEETKRKELQNSMAEDSKALAAKEK
EVKKITDGLHGLQEASNKDAEALAAAQQHFNAVSAGLSSNEDGAEATLAGQMIACKNDISKAQTEAKQAQ
MKLKHAQQELKSKQAEVKKMDSGYKKDQDAFEAVKKAKEKLETEMKKLNYEENKEEKLLEKHRQLSRDIN
NLKGKHEALLAKFPNLQFAYKDPEKNWNRNSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTA
KKLLEKGELKRRYTIIPLNKISARCIAPETLRVAQNLVGPDNVHVALSLVDYKPELQKGMEFVFGTTFVC
NNMDNAKKVAFDKRIMTRTVTLGGDVFDPHGTLSGGARSQAASILTKFQEVKDVQDELRTKENELRALEE
ELAGLKNVAEKYRQLKQQWEMKTEEGDLLQTKLQQSSYHKQQEELDALKKTIEESEETLKSTKEIQKKAE
EKYEALENKMKNAEAEREKELKDAQKKLDCAKTKADASSKKMKEKQQEVEAITLELEELKREHASNEQQL
DAVNEAIKAYEGQIEKMAAEVAKNKESVNKAQDELMKQKQIITAQDNIIKDKCAEVAKHNLQNNESQLKI
KELDHSISKHKREADDAAAKVSKMLSDYDWINAEKHLFGQPNSAYDFKTNNPKEAGQRLQKLQEVKEKLG
RNVNLRAMNVLTEAEERYNDLMKKKRIVENDKSKILATIEDLDQKKNQALNIAWQKVNKDFGSIFSTLLP
GANAMLAPPEGQTVLDGLEFKVALGNTWKENLTELSGGQRSLVALSLILSMLLFKPAPIYILDEVDAALD
LSHTQNIGQMLRTHFTHSQFIVVSLKEGMFNNANVLFKTKFVDGVSTVARFTQSQAGKIPKEAKSRGKEP
N


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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