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Report for CCDS71482.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71482.1 Public Mus musculus 4 Ppp1r8 23 108 98 CCDS HistoryNCBI Gene:100336Re-query CCDS DB by CCDS ID:71482.1Re-query CCDS DB by GeneID:100336See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71482.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105919.1 ENSMUSP00000101539.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105919.1Link to Ensembl Protein Viewer:ENSMUSP00000101539.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105919Re-query CCDS DB by Protein ID:ENSMUSP00000101539
Original member Current member NCBI NM_001290725.1 NP_001277654.1 Accepted alive Link to Nucleotide Sequence:NM_001290725.1Link to Protein Sequence:NP_001277654.1Re-query CCDS DB by Nucleotide ID:NM_001290725Re-query CCDS DB by Protein ID:NP_001277654Link to BLAST:NP_001277654.1

Chromosomal Locations for CCDS 71482.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132827853 132828203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132829373 132829437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132830625 132830769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132832897 132833117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132834637 132834790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132840644 132840704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132843057 132843112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1053 nt):
ATGGCGGCAGCCGTGAACTCCGGCTCCAGCCTCCCGCTGTTCGACTGCCCGACTTGGGCAGGTAAACCAC
CACCTGGCTTACATCTGGATGTGGTGAAAGGAGACAAGCTAATTGAGAAGCTGATTATTGATGAGAAAAA
GTATTACTTATTTGGGAGGAACCCCGATCTGTGTGACTTCACTATCGACCACCAGTCATGCTCTCGAGTC
CACGCAGCGCTGGTGTACCACAAACACCTGAAGAGAGTTTTCTTGATAGACCTCAACAGCACACATGGCA
CTTTCTTGGGTCACATTCGGCTGGAACCTCACAAGCCTCAACAGATTCCCATCGATTCTACGGTCTCATT
TGGCGCGTCCACGAGGGCATACACTCTGCGAGAGAAGCCTCAGACATTGCCATCGGCTGTGAAAGGAGAT
GAGAAGATGGGCGGAGAGGATGATGAACTCAAGGGCTTGTTGGGACTTCCCGAAGAGGAGACCGAGCTGG
ATAACCTGACAGAGTTCAACACTGCCCACAACAAGCGGATTTCAACCCTCACTATTGAGGAGGGGAACCT
GGACATCCAGAGACCAAAGAGGAAGAGGAAGAACTCAAGGGTGACCTTCAGTGAGGATGACGAGATCATC
AACCCAGAGGACGTGGATCCGTCTGTTGGTCGGTTCCGGAACATGGTGCAGACAGCAGTGGTTCCAGTCA
AGAAGCGGATGGAGGGCTCTGGCTCTCTGGGCCTGGAGGAGTCGGGGAGCAGGCGCATGCAGAACTTTGC
CTTCAGTGGAGGACTATATGGGGGCCTGCCCCCCACACACAGTGAAACGGGCTCCCAGCCGCATGGCATT
CATGGGACAGCGCTCATTGGTGGCTTGCCCATGCCATACCCGAACCTCGCCCCTGATGTGGACTTGACTC
CTGTTGTGCCATCAGCAGTGGCCATAAATCCCACACCAAACCCTGCAGTCTATAACCCTGAGGCTGTGAA
TGAACCCAAGAAGAAGAAATACGCGAAGGAGGCTTGGCCGGGCAAGAAGCCCACACCTTCCTTACTGATT
TGA

Translation (350 aa):
MAAAVNSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRV
HAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQTLPSAVKGD
EKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEII
NPEDVDPSVGRFRNMVQTAVVPVKKRMEGSGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSETGSQPHGI
HGTALIGGLPMPYPNLAPDVDLTPVVPSAVAINPTPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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