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Report for CCDS27905.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27905.1 Public Mus musculus 15 Glycam1 23 108 98 CCDS HistoryNCBI Gene:14663Re-query CCDS DB by CCDS ID:27905.1Re-query CCDS DB by GeneID:14663See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27905.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023134.4 ENSMUSP00000023134.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023134.4Link to Ensembl Protein Viewer:ENSMUSP00000023134.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023134Re-query CCDS DB by Protein ID:ENSMUSP00000023134
Original member Current member NCBI NM_008134.3 NP_032160.1 Accepted alive Link to Nucleotide Sequence:NM_008134.3Link to Protein Sequence:NP_032160.1Re-query CCDS DB by Nucleotide ID:NM_008134Re-query CCDS DB by Protein ID:NP_032160Link to BLAST:NP_032160.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032160.1 151 Q02596 151 100% 0 0

Chromosomal Locations for CCDS 27905.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103562884 103563014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103563243 103563458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103564197 103564241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103564968 103565031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (456 nt):
ATGAAATTCTTCACTGTCCTGCTATTTGTCAGTCTTGCTGCCACCTCTCTTGCTCTCCTGCCTGGGTCCA
AAGATGAACTTCAAATGAAGACTCAGCCCACAGATGCCATTCCAGCTGCCCAGTCCACTCCCACCAGCTA
CACCAGTGAGGAGAGTACTTCCAGTAAGGACCTTTCCAAGGAGCCTTCCATCTTCAGAGAAGAGCTGATT
TCCAAAGATAATGTGGTGATAGAATCTACCAAGCCAGAGAATCAAGAGGCCCAGGATGGGCTCAGGAGCG
GGTCATCTCAGCTGGAAGAGACCACAAGACCCACCACCTCAGCTGCAACCACCTCAGAGGAAAATCTGAC
CAAGTCAAGCCAGACAGTGGAGGAAGAACTGGGTAAAATAATTGAAGGATTTGTAACTGGTGCAGAAGAC
ATAATCTCTGGTGCCAGTCGTATCACGAAGTCATGA

Translation (151 aa):
MKFFTVLLFVSLAATSLALLPGSKDELQMKTQPTDAIPAAQSTPTSYTSEESTSSKDLSKEPSIFREELI
SKDNVVIESTKPENQEAQDGLRSGSSQLEETTRPTTSAATTSEENLTKSSQTVEEELGKIIEGFVTGAED
IISGASRITKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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