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Report for CCDS28967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28967.1 Public Mus musculus 17 Xdh 23 108 98 CCDS HistoryNCBI Gene:22436Re-query CCDS DB by CCDS ID:28967.1Re-query CCDS DB by GeneID:22436See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28967.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024866.5 ENSMUSP00000024866.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024866.5Link to Ensembl Protein Viewer:ENSMUSP00000024866.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000024866Re-query CCDS DB by Protein ID:ENSMUSP00000024866
Original member Current member NCBI NM_011723.3 NP_035853.2 Accepted alive Link to Nucleotide Sequence:NM_011723.3Link to Protein Sequence:NP_035853.2Re-query CCDS DB by Nucleotide ID:NM_011723Re-query CCDS DB by Protein ID:NP_035853Link to BLAST:NP_035853.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035853.2 1335 Q00519 1335 100% 0 0

Chromosomal Locations for CCDS 28967.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 73884433 73884483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73886343 73886519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73891111 73891299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73892719 73892784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73893600 73893714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73895744 73895796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73897007 73897081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73897682 73897810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73898316 73898411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73898961 73899042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73900262 73900407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73900532 73900723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73906010 73906096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73906204 73906291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73906695 73906828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73907621 73907745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73909247 73909343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73910166 73910285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73912417 73912540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73913871 73914040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73915677 73915760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73916788 73916962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73918373 73918557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73920393 73920502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73921267 73921360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73922413 73922564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73923043 73923135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73924915 73925056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73926174 73926260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73926548 73926616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73934802 73934863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73935872 73935998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73939756 73939861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73941042 73941138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73943847 73943904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 73950078 73950128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4008 nt):
ATGACGAGGACAACGGTAGATGAGTTGGTCTTCTTTGTGAATGGCAAAAAGGTGGTGGAGAAAAATGCAG
ACCCTGAAACAACACTTCTGGTCTACCTTAGAAGAAAGTTGGGGCTGTGCGGGACCAAGCTTGGCTGTGG
AGAAGGTGGCTGTGGGGCATGCACCGTGATGATCTCCAAGTATGACCGCCTTCAGAACAAGATCGTTCAT
TTTTCCGTCAATGCCTGCTTGACCCCCATCTGCTCCTTGCATCATGTTGCTGTGACAACTGTGGAAGGCA
TAGGAAACACCAAGAAGCTGCATCCTGTCCAGGAGAGAATTGCCAAAAGCCATGGTTCCCAGTGTGGGTT
CTGTACCCCTGGTATTGTCATGAGTATGTACACACTGCTCCGAAACAAGCCTGAGCCTACTGTCGAGGAG
ATCGAGAATGCCTTCCAAGGAAACCTCTGCCGCTGTACAGGCTATAGACCCATCCTCCAGGGATTCCGGA
CCTTTGCCAAGGATGGTGGGTGCTGTGGAGGAAGTGGAAACAACCCAAACTGCTGCATGAGCCAAACAAA
GGACCAGACGATTGCTCCCTCATCTTCTTTATTCAACCCGGAGGATTTCAAACCTTTAGATCCCACCCAA
GAGCCCATCTTTCCCCCAGAGTTGCTGAGGCTGAAAGACACTCCCCGGAAGACGTTGCGTTTTGAAGGGG
AACGTGTGACCTGGATCCAGGTTTCAACCATGGAGGAACTGCTTGACCTCAAAGCCCAGCACCCTGATGC
CAAGCTGGTGGTGGGAAACACAGAGATAGGCATTGAAATGAAATTTAAAAATATGCTATTTCCTCTGATC
ATCTGCCCAGCCTGGATCCTTGAACTGACCTCAGTGGCACATGGGCCTGAGGGAATCTCCTTTGGAGCCG
CTTGCCCCCTTAGCTTGGTGGAAAGTGTCCTGGCGGACGCGATTGCTACACTTCCAGAGCAGAGGACAGA
GGTGTTCAGAGGCGTGATGGAGCAGCTGCGCTGGTTTGCTGGCAAGCAGGTCAAGTCCGTGGCGTCCATT
GGCGGGAACATCATCACCGCGAGCCCCATCTCTGACCTCAACCCTGTGCTCATGGCCAGTCGAGCCAAGC
TGACCCTCGCATCTAGAGGTACCAAGAGAACGGTCTGGATGGACCATACCTTCTTCCCTGGCTATAGAAG
GACTCTGCTCAGTCCAGAGGAGATATTGGTGTCCATTGTGATCCCCTACAGCAGGAAGGGTGAGTTTTTC
TCAGCCTTCAAGCAGGCCTCCAGGAGAGAAGATGACATTGCCAAGGTGACCAGTGGCATGAGAGTCCTGT
TCAAGCCAGGGACCACTGAAGTGCAGGAACTGTCCCTTTGCTTTGGAGGGATGGCTGACAGAACTGTCTC
AGCCCTCAAGACCACTCCGAAGCAGCTGTCCAAGTCCTGGAATGAGGAGTTGCTGCAGGATGTGTGTGCT
GGCTTGGCAGAGGAGCTGCACCTGGCCCCCGACGCCCCTGGTGGGATGGTGGAATTCCGGCGCACCCTCA
CCCTCAGCTTCTTCTTCAAGTTCTACCTGACAGTGCTTCAGAAGCTGGGCAGAGCGGACCTTGAGGGTAT
GTGTGGTAAACTGGACCCCACCTTTGCCAGCGCCACCCTGCTCTTTCAGAAGGATCCTCCAGCTAACGTC
CAGCTTTTCCAAGAGGTGCCCAAGGGTCAGTCTGAGGAGGACATGGTGGGCAGGCCCATGCCTCACCTGG
CAGCAGACATGCAGGCATCCGGGGAGGCTGTGTACTGTGATGACATTCCCCGCTATGAGAATGAGCTGTC
CCTCAGGCTGGTCACCAGCACGCGGGCCCATGCTAAAATCATGTCCATCGACACTTCAGAAGCCAAGAAG
GTGCCAGGGTTTGTTTGTTTCCTCACCTCAGAGGATGTCCCTGGTAGTAACATAACTGGCATTTTCAATG
ATGAAACTGTCTTTGCGAAGGATGAGGTTACTTGTGTTGGGCACATCATTGGTGCTGTGGTCGCTGACAC
CCCAGAACATGCACACAGAGCCGCTAGAGGGGTGAAAATCACCTATGAAGACCTTCCAGCCATTATCACA
ATCCAGGATGCTATAAAGAACAACTCCTTTTATGGCCCCGAGGTAAAAATCGAGAAAGGAGATCTCAAGA
AAGGCTTTTCTGAAGCTGACAATGTTGTCTCAGGAGAATTATATATTGGTGGCCAGGAGCACTTCTATCT
GGAGACCCACTGCACCATTGCCGTGCCGAAAGGCGAGGCAGGCGAGATGGAGCTCTTCGTGAGCACACAG
AACACCATGAAAACCCAGAGCTTTATTGCAAAGATGTTGGGTGTTCCAGACAACAGAATTGTAGTCCGAG
TGAAAAGAATGGGTGGAGGCTTTGGAGGGAAGGAGACCCGGAGCACTCTGATATCCACAGCAGTGGCCTT
GGCTGCATACAAGACAGGCCGCCCTGTACGTTGCATGCTGGACCGAGACGAGGACATGCTCATAACTGGT
GGCAGACATCCCTTCCTGGCTAAATACAAGGTGGGCTTCATGAAGACTGGGACTATAGTGGCACTGGAGG
TGGCTCACTTCAGCAATGGCGGGAACAGTGAGGATCTCTCTCGGAGTATAATGGAAAGAGCTGTATTCCA
CATGGACAACGCCTATAAGATCCCCAACATTCGCGGCACCGGGAGGATTTGTAAGACTAATCTGCCCTCT
AACACAGCCTTCAGAGGCTTTGGGGGTCCTCAGGGGATGCTAATCGCAGAATACTGGATGAGTGAGGTCG
CTGTCACCTGTGGGCTGCCTGCAGAGGAGGTACGGAGGAAAAACATGTACAAAGAAGGGGACCTGACTCA
CTTCAACCAGAAGCTGGAGGGGTTCACCTTGCCCAGGTGCTGGGATGAGTGCATAGCGAGCTCCCAGTAT
CAGGCTCGCAAGATGGAAGTGGAGAAATTCAACAGGGAGAACTGTTGGAAAAAGAGAGGGCTGTGTATAA
TCCCGACTAAGTTTGGAATAAGCTTCACACTTTCTTTTCTGAACCAGGGGGGTGCCTTGGTCCACGTGTA
CACGGATGGGTCGGTGCTGCTGACACATGGAGGTACTGAGATGGGTCAAGGCCTTCACACCAAGATGGTT
CAGGTGGCCAGCAGAGCTCTGAAAATCCCCACTTCCAAGATCCATATAACGGAGACAAGCACTAACACTG
TCCCTAACACCTCTCCCACGGCTGCCTCTGCCAGCGCTGACCTCAATGGCCAGGCCATTTATGAAGCCTG
TCAGACCATACTGAAAAGACTGGAGCCCTTCAAGAAAAAGAATCCCTCAGGCTCCTGGGAGAGCTGGGTC
ATGGATGCCTACACTAGTGCAGTGAGCTTGTCTGCTACTGGATTTTATAAGACACCCAACCTTGGTTACA
GCTTTGAGACAAACTCTGGGAACCCCTTCCACTACTTCAGTTATGGGGTGGCTTGCTCAGAAGTAGAAAT
TGACTGCTTAACAGGGGACCATAAGAATCTCCGTACAGATATCGTCATGGATGTTGGTTCCAGCTTGAAT
CCTGCCATTGATATCGGACAGGTAGAAGGGGCATTTGTCCAGGGTCTTGGTCTTTTCACCATGGAGGAGC
TGCACTACTCTCCCGAGGGGAGCCTGCACACTCGTGGCCCCAGTACCTACAAGATCCCTGCATTTGGCAG
CATCCCCATTGAGTTCAGAGTATCCCTGCTCCGCGACTGCCCCAACAAGAGGGCCATCTATGCATCCAAG
GCTGTCGGCGAGCCACCTCTTTTCCTGGCTTCTTCGATCTTCTTTGCCATCAAAGATGCCATCCGCGCAG
CTCGAGCTCAGCACGGAGACAGTAACGCCAAACAGCTCTTCCAGCTAGACAGCCCCGCCACTCCGGAGAA
GATCCGAAACGCTTGTGTGGATCAGTTCACCACCCTGTGTGCCACTGGAACACCAGAAAACTGTAAATCC
TGGTCCGTGAGGATCTGA

Translation (1335 aa):
MTRTTVDELVFFVNGKKVVEKNADPETTLLVYLRRKLGLCGTKLGCGEGGCGACTVMISKYDRLQNKIVH
FSVNACLTPICSLHHVAVTTVEGIGNTKKLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNKPEPTVEE
IENAFQGNLCRCTGYRPILQGFRTFAKDGGCCGGSGNNPNCCMSQTKDQTIAPSSSLFNPEDFKPLDPTQ
EPIFPPELLRLKDTPRKTLRFEGERVTWIQVSTMEELLDLKAQHPDAKLVVGNTEIGIEMKFKNMLFPLI
ICPAWILELTSVAHGPEGISFGAACPLSLVESVLADAIATLPEQRTEVFRGVMEQLRWFAGKQVKSVASI
GGNIITASPISDLNPVLMASRAKLTLASRGTKRTVWMDHTFFPGYRRTLLSPEEILVSIVIPYSRKGEFF
SAFKQASRREDDIAKVTSGMRVLFKPGTTEVQELSLCFGGMADRTVSALKTTPKQLSKSWNEELLQDVCA
GLAEELHLAPDAPGGMVEFRRTLTLSFFFKFYLTVLQKLGRADLEGMCGKLDPTFASATLLFQKDPPANV
QLFQEVPKGQSEEDMVGRPMPHLAADMQASGEAVYCDDIPRYENELSLRLVTSTRAHAKIMSIDTSEAKK
VPGFVCFLTSEDVPGSNITGIFNDETVFAKDEVTCVGHIIGAVVADTPEHAHRAARGVKITYEDLPAIIT
IQDAIKNNSFYGPEVKIEKGDLKKGFSEADNVVSGELYIGGQEHFYLETHCTIAVPKGEAGEMELFVSTQ
NTMKTQSFIAKMLGVPDNRIVVRVKRMGGGFGGKETRSTLISTAVALAAYKTGRPVRCMLDRDEDMLITG
GRHPFLAKYKVGFMKTGTIVALEVAHFSNGGNSEDLSRSIMERAVFHMDNAYKIPNIRGTGRICKTNLPS
NTAFRGFGGPQGMLIAEYWMSEVAVTCGLPAEEVRRKNMYKEGDLTHFNQKLEGFTLPRCWDECIASSQY
QARKMEVEKFNRENCWKKRGLCIIPTKFGISFTLSFLNQGGALVHVYTDGSVLLTHGGTEMGQGLHTKMV
QVASRALKIPTSKIHITETSTNTVPNTSPTAASASADLNGQAIYEACQTILKRLEPFKKKNPSGSWESWV
MDAYTSAVSLSATGFYKTPNLGYSFETNSGNPFHYFSYGVACSEVEIDCLTGDHKNLRTDIVMDVGSSLN
PAIDIGQVEGAFVQGLGLFTMEELHYSPEGSLHTRGPSTYKIPAFGSIPIEFRVSLLRDCPNKRAIYASK
AVGEPPLFLASSIFFAIKDAIRAARAQHGDSNAKQLFQLDSPATPEKIRNACVDQFTTLCATGTPENCKS
WSVRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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