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Report for CCDS27257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27257.1 Public Mus musculus 14 Hr 23 108 98 CCDS HistoryNCBI Gene:15460Re-query CCDS DB by CCDS ID:27257.1Re-query CCDS DB by GeneID:15460See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27257.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022691.13 ENSMUSP00000022691.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022691.13Link to Ensembl Protein Viewer:ENSMUSP00000022691.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022691Re-query CCDS DB by Protein ID:ENSMUSP00000022691
Original member Current member EBI ENSMUST00000161069.7 ENSMUSP00000124816.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161069.7Link to Ensembl Protein Viewer:ENSMUSP00000124816.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161069Re-query CCDS DB by Protein ID:ENSMUSP00000124816
Original member Current member NCBI NM_021877.3 NP_068677.2 Accepted alive Link to Nucleotide Sequence:NM_021877.3Link to Protein Sequence:NP_068677.2Re-query CCDS DB by Nucleotide ID:NM_021877Re-query CCDS DB by Protein ID:NP_068677Link to BLAST:NP_068677.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068677.2 1182 Q61645 1182 100% 0 0

Chromosomal Locations for CCDS 27257.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70556389 70557000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70557629 70558409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70559639 70559789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70559873 70560063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70561812 70561976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70563329 70563418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70563567 70563682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70565302 70565383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70566029 70566192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70566310 70566546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70566780 70566945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70567149 70567218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70567502 70567632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70567776 70567895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70567977 70568092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70571378 70571542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70571908 70572036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70572242 70572304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3549 nt):
ATGGAGAGTATGCCCAGCTTCCTGAAGGACACCCCAGCCTGGGAGAAGACAGCCCCTGTGAACGGCATTG
TGGGACAGGAGCCTGGTACCTCACCACAGGATGGCTTGCGCCATGGGGCACTGTGCCTAGGAGAACCTGC
TCCCTTTTGGAGGGGTGTTCTGAGCACCCCAGACTCCTGGCTCCCTCCTGGCTTCCTCCAAGGCCCCAAG
GACACACTCTCACTGGTGGAGGGTGAGGGTCCTCGGAACGGGGAGAGGAAGGGCAGCTGGCTAGGCGGCA
AGGAAGGACTGCGCTGGAAGGAAGCGATGCTGGCCCATCCACTGGCCTTTTGTGGGCCGGCATGCCCACC
TCGCTATGGGCCCCTGATACCTGAGCATAGTGGTGGCCATCCCAAGAGTGACCCTGTGGCCTTCCGGCCC
TTGCACTGCCCTTTCCTGCTGGAGACCAAGATTCTAGAGCGAGCTCCCTTCTGGGTTCCTACCTGCTTGC
CTCCCTACCTGATGTCCAGCCTGCCCCCAGAGCGTCCATATGACTGGCCTTTGGCCCCAAACCCATGGGT
ATACTCTGGGAGCCAGCCAAAAGTGCCCTCTGCCTTTGGCTTAGGCAGCAAGGGCTTTTACCACAAGGAT
CCGAACATCCTCAGGCCAGCAAAGGAGCCCTTGGCAGAGTCTGGGATGTTGGGCTTAGCCCCTGGTGGGC
ATCTCCAGCAAGCCTGTGAATCAGAAGGCCCCTCACTTCACCAGAGGGATGGGGAGACAGGAGCTGGCAG
GCAGCAGAATCTTTGCCCAGTTTTCTTGGGGTACCCAGACACTGTTCCTCGGGCCCCCTGGCCTTCTTGT
CCCCCAGGCCTGGTTCACAGTCTTGGCAACATTTGGGCTGGGCCAGGAAGTAATAGCCTTGGGTACCAAC
TAGGACCACCAGCCACACCAAGGTGCCCATCTCCTGGGCCTCCTACCCCTCCAGGGGGCTGTTGCTCATC
CCATCTACCTGCCAGAGAGGGGGATCTTGGCCCTTGTAGGAAATGCCAGGATAGCCCAGAGGGAGGTAGC
AGTGGGCCAGGGGAATCCAGTGAAGAAAGGAACAAAGCTGATTCCAGGGCCTGTCCCCCAAGCCATCACA
CCAAGCTGAAAAAGACCTGGCTCACACGCCACTCGGAACAGTTTGAGTGCCCAGGTGGCTGTTCAGGGAA
GGAAGAGAGCCCAGCCACTGGGCTCCGGGCACTCAAGAGGGCAGGCAGTCCAGAGGTCCAAGGAGCATCA
AGGGGCCCAGCTCCCAAACGCCCATCCCACCCTTTCCCAGGCACTGGGAGGCAGGGGGCCAGGGCTTGGC
AGGAGACACCGGAGACAATCATAGGAAGCAAGGCGGAGGCAGAGCAACAAGAGGAACAGAGAGGGCCCCG
AGATGGCAGGATTAGGCTCCAGGAGTCCAGACTTGTGGATACATCCTGCCAGCATCACTTAGCAGGTGTC
ACCCAGTGCCAAAGCTGTGTCCAGGCAGCTGGAGAGGTAGGGGTACTGACCGGCCACTCCCAGAAATCAC
GTAGGTCACCCCTGGAGGAGAAGCAGTTGGAGGAGGAGGATTCCTCTGCCACTTCCGAAGAAGGAGGAGG
AGGGCCTGGCCCAGAAGCTTCACTCAACAAGGGCCTGGCCAAGCACCTGCTGAGTGGTTTGGGGGACCGA
CTCTGCCGCCTGCTGCGGAAGGAGCGGGAGGCCCTTGCCTGGGCACAGCGAGAAGGCCAGGGGCCAGCCA
TGACAGAGGACAGCCCAGGCATTCCACATTGCTGCAGTCGATGCCACCACGGACTCTTCAACACCCACTG
GAGATGTTCCCACTGTAGCCACCGGCTGTGTGTAGCCTGTGGTCGCATAGCCGGTGCTGGAAAGAACAGG
GAGAAAACAGGTTCTCAGGAACAGCACACAGATGACTGCGCCCAGGAGGCTGGGCATGCTGCCTGTTCCC
TGATCCTGACCCAGTTTGTCTCCAGCCAGGCGCTGGCAGAACTGAGCACTGTGATGCACCAAGTCTGGGC
CAAGTTTGACATTCGGGGGCACTGTTTCTGCCAGGTTGATGCCCGTGTGTGGGCCCCCGGGGATGGGGGT
CAGCAGAAGGAACCAACAGAGAAAACTCCCCCAACTCCACAACCTTCCTGCAATGGAGATTCCAATCGGA
CCAAGGACATCAAAGAAGAGACCCCAGACTCCACTGAGAGCCCAGCAGAGGATGGTGCTGGCCGGTCACC
CCTTCCTTGTCCCTCTCTCTGTGAGCTGCTAGCCTCTACTGCTGTCAAACTCTGCCTGGGGCATGACCGG
ATTCACATGGCCTTTGCTCCGGTCACCCCAGCTCTGCCCAGTGATGACCGCATTACCAACATCCTGGACA
GCATTATTGCGCAGGTAGTAGAACGGAAGATCCAAGAGAAAGCCCTGGGGCCAGGCCTGCGAGCAGGGTC
AGGCTTACGCAAGGGCCTGAGCCTTCCATTGTCACCAGTGCGAACCCGGCTGTCTCCTCCTGGAGCTTTG
CTGTGGCTGCAGGAGCCCAGGCCTAAGCATGGCTTCCATCTCTTCCAGGAACACTGGCGGCAGGGCCAGC
CCGTGTTAGTGTCAGGCATCCAGAAGACATTGAGACTTAGCCTGTGGGGAATGGAAGCCCTTGGGACACT
TGGTGGCCAGGTGCAGACACTGACTGCCCTTGGGCCTCCCCAGCCCACAAACCTGGACAGCACAGCATTC
TGGGAGGGATTCTCTCATCCTGAGACACGTCCAAAGTTAGATGAGGGCTCTGTCCTCCTGCTACACCGAA
CCCTGGGGGATAAGGACGCTAGCAGGGTGCAGAACCTTGCCTCCAGCCTTCCACTCCCAGAATACTGTGC
CCACCAAGGGAAACTCAACCTAGCGTCCTACCTCCCCCTGGGCCTCACACTGCATCCACTGGAGCCCCAG
CTCTGGGCGGCCTATGGTGTGAACTCACACCGTGGACACCTGGGGACCAAGAATCTATGCGTGGAGGTGT
CTGACCTAATCAGTATCCTGGTGCACGCCGAGGCCCAGCTGCCTCCCTGGTATCGAGCACAGAAAGATTT
CCTCTCAGGCCTGGATGGGGAAGGACTCTGGTCTCCAGGGAGCCAGACCAGCACTGTGTGGCATGTGTTC
CGGGCCCAGGATGCCCAGCGCATCCGTCGCTTTCTCCAGATGGTGTGCCCAGCTGGAGCAGGAACCTTGG
AGCCTGGTGCCCCAGGCAGCTGCTACTTGGATGCAGGGTTGCGCCGACGGCTAAGAGAAGAGTGGGGTGT
GAGCTGCTGGACCCTGCTGCAGGCTCCTGGGGAAGCGGTGCTGGTCCCGGCTGGGGCGCCCCATCAGGTG
CAGGGCCTGGTGAGCACAATCAGTGTCACTCAGCACTTTCTGTCTCCTGAGACCTCTGCCCTCTCTGCTC
AGCTCTACCACCAGGGAGCCAGCCTACCCCCTGACCACCGTATGCTTTATGCCCAGATGGACCGGGCTGT
GTTCCAAGCAGTAAAGGCGGCTGTGGGGGCGTTACAGGAAGCTAAATAG

Translation (1182 aa):
MESMPSFLKDTPAWEKTAPVNGIVGQEPGTSPQDGLRHGALCLGEPAPFWRGVLSTPDSWLPPGFLQGPK
DTLSLVEGEGPRNGERKGSWLGGKEGLRWKEAMLAHPLAFCGPACPPRYGPLIPEHSGGHPKSDPVAFRP
LHCPFLLETKILERAPFWVPTCLPPYLMSSLPPERPYDWPLAPNPWVYSGSQPKVPSAFGLGSKGFYHKD
PNILRPAKEPLAESGMLGLAPGGHLQQACESEGPSLHQRDGETGAGRQQNLCPVFLGYPDTVPRAPWPSC
PPGLVHSLGNIWAGPGSNSLGYQLGPPATPRCPSPGPPTPPGGCCSSHLPAREGDLGPCRKCQDSPEGGS
SGPGESSEERNKADSRACPPSHHTKLKKTWLTRHSEQFECPGGCSGKEESPATGLRALKRAGSPEVQGAS
RGPAPKRPSHPFPGTGRQGARAWQETPETIIGSKAEAEQQEEQRGPRDGRIRLQESRLVDTSCQHHLAGV
TQCQSCVQAAGEVGVLTGHSQKSRRSPLEEKQLEEEDSSATSEEGGGGPGPEASLNKGLAKHLLSGLGDR
LCRLLRKEREALAWAQREGQGPAMTEDSPGIPHCCSRCHHGLFNTHWRCSHCSHRLCVACGRIAGAGKNR
EKTGSQEQHTDDCAQEAGHAACSLILTQFVSSQALAELSTVMHQVWAKFDIRGHCFCQVDARVWAPGDGG
QQKEPTEKTPPTPQPSCNGDSNRTKDIKEETPDSTESPAEDGAGRSPLPCPSLCELLASTAVKLCLGHDR
IHMAFAPVTPALPSDDRITNILDSIIAQVVERKIQEKALGPGLRAGSGLRKGLSLPLSPVRTRLSPPGAL
LWLQEPRPKHGFHLFQEHWRQGQPVLVSGIQKTLRLSLWGMEALGTLGGQVQTLTALGPPQPTNLDSTAF
WEGFSHPETRPKLDEGSVLLLHRTLGDKDASRVQNLASSLPLPEYCAHQGKLNLASYLPLGLTLHPLEPQ
LWAAYGVNSHRGHLGTKNLCVEVSDLISILVHAEAQLPPWYRAQKDFLSGLDGEGLWSPGSQTSTVWHVF
RAQDAQRIRRFLQMVCPAGAGTLEPGAPGSCYLDAGLRRRLREEWGVSCWTLLQAPGEAVLVPAGAPHQV
QGLVSTISVTQHFLSPETSALSAQLYHQGASLPPDHRMLYAQMDRAVFQAVKAAVGALQEAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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