NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28567.1 Public Mus musculus 17 Pacsin1 23 108 98 CCDS HistoryNCBI Gene:23969Re-query CCDS DB by CCDS ID:28567.1Re-query CCDS DB by GeneID:23969See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28567.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045896.10 ENSMUSP00000044168.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045896.10Link to Ensembl Protein Viewer:ENSMUSP00000044168.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000045896Re-query CCDS DB by Protein ID:ENSMUSP00000044168
Original member Current member EBI ENSMUST00000097360.2 ENSMUSP00000094973.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097360.2Link to Ensembl Protein Viewer:ENSMUSP00000094973.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097360Re-query CCDS DB by Protein ID:ENSMUSP00000094973
Original member Current member EBI ENSMUST00000114873.7 ENSMUSP00000110523.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114873.7Link to Ensembl Protein Viewer:ENSMUSP00000110523.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114873Re-query CCDS DB by Protein ID:ENSMUSP00000110523
Original member Current member EBI ENSMUST00000232437.1 ENSMUSP00000155999.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232437.1Link to Ensembl Protein Viewer:ENSMUSP00000155999.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232437Re-query CCDS DB by Protein ID:ENSMUSP00000155999
Original member Current member EBI ENSMUST00000231669.1 ENSMUSP00000156003.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231669.1Link to Ensembl Protein Viewer:ENSMUSP00000156003.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231669Re-query CCDS DB by Protein ID:ENSMUSP00000156003
Original member Current member NCBI NM_001286743.1 NP_001273672.1 Accepted alive Link to Nucleotide Sequence:NM_001286743.1Link to Protein Sequence:NP_001273672.1Re-query CCDS DB by Nucleotide ID:NM_001286743Re-query CCDS DB by Protein ID:NP_001273672Link to BLAST:NP_001273672.1
Original member Current member NCBI NM_001286744.1 NP_001273673.1 Accepted alive Link to Nucleotide Sequence:NM_001286744.1Link to Protein Sequence:NP_001273673.1Re-query CCDS DB by Nucleotide ID:NM_001286744Re-query CCDS DB by Protein ID:NP_001273673Link to BLAST:NP_001273673.1
Original member Current member NCBI NM_011861.3 NP_035991.1 Accepted alive Link to Nucleotide Sequence:NM_011861.3Link to Protein Sequence:NP_035991.1Re-query CCDS DB by Nucleotide ID:NM_011861Re-query CCDS DB by Protein ID:NP_035991Link to BLAST:NP_035991.1
Original member Current member NCBI NM_178365.4 NP_848142.1 Accepted alive Link to Nucleotide Sequence:NM_178365.4Link to Protein Sequence:NP_848142.1Re-query CCDS DB by Nucleotide ID:NM_178365Re-query CCDS DB by Protein ID:NP_848142Link to BLAST:NP_848142.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273672.1 441 Q61644 441 100% 0 0
NP_001273673.1 441 Q61644 441 100% 0 0
NP_035991.1 441 Q61644 441 100% 0 0
NP_848142.1 441 Q61644 441 100% 0 0

Chromosomal Locations for CCDS 28567.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 27701888 27701941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27702700 27702856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27704845 27705080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27705625 27705780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27705917 27706092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27706994 27707114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27707219 27707346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27707880 27708067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27708426 27708535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGTCTGGCTCCTACGATGAGGCCTCAGAGGAGATCACAGATAGCTTCTGGGAGGTGGGGAACTACAAGC
GGACGGTGAAGCGCATCGACGATGGGCACCGCCTGTGCAACGACCTCATGAGCTGCGTGCAGGAGCGCGC
CAAGATCGAGAAGGCATACGCGCAGCAGCTCACCGACTGGGCCAAGCGCTGGCGCCAGCTCATCGAGAAA
GGTCCTCAGTATGGCAGCCTGGAGCGGGCGTGGGGCGCCATGATGACAGAAGCAGATAAGGTCAGCGAGC
TGCACCAGGAGGTGAAGAACAGCCTGCTGAATGAGGACCTGGAGAAAGTCAAGAACTGGCAGAAGGATGC
CTATCACAAGCAGATCATGGGTGGCTTCAAGGAGACGAAAGAGGCCGAGGATGGCTTCCGAAAGGCCCAG
AAGCCCTGGGCTAAAAAGATGAAGGAGCTAGAGGCGGCCAAGAAGGCCTATCACTTGGCTTGTAAGGAGG
AAAGGCTGGCCATGACCCGGGAGATGAACAGTAAGACAGAGCAGTCGGTCACCCCTGAACAGCAGAAGAA
ACTTGTGGACAAAGTGGACAAATGCAGACAGGATGTGCAAAAGACTCAGGAGAAGTATGAGAAGGTGCTG
GAAGATGTGGGCAAGACCACACCACAGTACATGGAGGGCATGGAGCAGGTGTTTGAGCAGTGCCAGCAGT
TTGAGGAGAAGCGGCTGGTCTTCCTGAAGGAAGTCCTGCTGGATATCAAACGGCATCTCAACCTAGCGGA
GAACAGCAGCTACATGCATGTCTACCGAGAACTGGAGCAGGCCATCCGGGGGGCCGATGCCCAGGAGGAC
CTCAGGTGGTTCCGCAGCACCAGTGGCCCCGGGATGCCCATGAACTGGCCGCAGTTCGAGGAGTGGAACC
CAGACCTCCCGCACACCACTGCCAAGAAGGAGAAACAGCCTAAGAAGGCAGAGGGGGCCACCCTGAGCAA
TGCCACTGGGGCTGTAGAATCCACATCCCAGGCTGGGGACCGTGGCAGTGTTAGCAGCTATGACCGAGGC
CAAACATATGCCACCGAGTGGTCAGACGATGAGAGCGGAAACCCCTTCGGGGGCAATGAGGCCAATGGTG
GCGCCAACCCCTTCGAGGATGATGCCAAGGGAGTTCGTGTACGGGCACTCTATGACTACGACGGTCAGGA
GCAGGATGAGCTCAGCTTCAAGGCCGGAGATGAGCTCACCAAGCTCGGAGAGGAAGACGAACAGGGTTGG
TGCCGCGGGCGGCTGGACAGCGGACAGCTGGGCCTCTATCCTGCCAACTACGTTGAGGCTATATAG

Translation (441 aa):
MSGSYDEASEEITDSFWEVGNYKRTVKRIDDGHRLCNDLMSCVQERAKIEKAYAQQLTDWAKRWRQLIEK
GPQYGSLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQ
KPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVL
EDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLNLAENSSYMHVYRELEQAIRGADAQED
LRWFRSTSGPGMPMNWPQFEEWNPDLPHTTAKKEKQPKKAEGATLSNATGAVESTSQAGDRGSVSSYDRG
QTYATEWSDDESGNPFGGNEANGGANPFEDDAKGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGW
CRGRLDSGQLGLYPANYVEAI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH