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Report for CCDS39298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39298.1 Public Mus musculus 5 Ncf1 23 108 98 CCDS HistoryNCBI Gene:17969Re-query CCDS DB by CCDS ID:39298.1Re-query CCDS DB by GeneID:17969See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39298.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111275.7 ENSMUSP00000106906.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111275.7Link to Ensembl Protein Viewer:ENSMUSP00000106906.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111275Re-query CCDS DB by Protein ID:ENSMUSP00000106906
Original member Current member EBI ENSMUST00000146354.7 ENSMUSP00000138121.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146354.7Link to Ensembl Protein Viewer:ENSMUSP00000138121.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146354Re-query CCDS DB by Protein ID:ENSMUSP00000138121
Original member Current member NCBI NM_010876.4 NP_035006.3 Accepted alive Link to Nucleotide Sequence:NM_010876.4Link to Protein Sequence:NP_035006.3Re-query CCDS DB by Nucleotide ID:NM_010876Re-query CCDS DB by Protein ID:NP_035006Link to BLAST:NP_035006.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035006.3 390 Q09014 390 100% 0 0

Chromosomal Locations for CCDS 39298.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 134221750 134221868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134222030 134222175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134222682 134222789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134223396 134223513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134225236 134225343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134225675 134225797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134226585 134226640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134227149 134227314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134227450 134227525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134228075 134228155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 134229496 134229567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1173 nt):
ATGGGGGACACCTTCATTCGCCATATTGCCCTGCTGGGCTTCGAGAAGCGCTTCATCCCCAGCCAGCACT
ATGTGTACATGTTCCTGGTTAAGTGGCAGGACCTGTCGGAGAAGGTGGTCTACAGAAAATTCACCGAGAT
CTACGAGTTCCATAAAATGCTGAAGGAGATGTTCCCCATTGAGGCCGGCGAGATCCACACAGAGAACAGA
GTCATCCCACACCTCCCGGCACCCAGGTGGTTTGATGGGCAACGAGCCGCTGAGAGTCGCCAGGGCACTC
TCACTGAATACTTCAACGGCCTCATGGGACTGCCCGTGAAGATCTCCCGCTGCCCACACCTGCTGGACTT
CTTCAAAGTGCGGCCTGATGACCTGAAACTGCCCACTGACAGCCAGGCGAAGAAGCCTGAGACATACCTG
GTGCCCAAAGATGGCAAGAATAACGTAGCTGACATCACAGGCCCCATCATCCTTCAGACCTATCGGGCCA
TTGCTGACTACGAGAAGAGTTCGGGAACAGAGATGACCGTGGCAACCGGAGACGTGGTGGACGTTGTGGA
GAAGAGCGAGAGCGGCTGGTGGTTTTGCCAGATGAAGACAAAGCGAGGTTGGGTCCCTGCATCCTATCTG
GAGCCCCTTGACAGTCCCGACGAGGCGGAGGATCCGGATCCCAACTACGCAGGTGAACCGTATGTAACCA
TCAAAGCGTACGCTGCTGTTGAAGAGGACGAGATGTCCCTGTCTGAGGGTGAAGCCATTGAGGTCATTCA
TAAGCTCCTGGATGGCTGGTGGGTGGTCAGGAAAGGGGATATCACCGGCTATTTCCCATCCATGTATCTG
CAGAAGGCTGGGGAGGAGATAACCCAGGCCCAGCGACAGATCAGAGGCCGCGGGGCACCACCTCGAAGGT
CGACCATCCGCAACGCACAGAGCATCCACCAGCGTTCTCGGAAGCGCCTTAGCCAGGACACCTATCGCCG
CAACAGCGTCCGATTCCTGCAGCAGCGCAGACGCCCGGGGCGACCCGGGCCGCTGAGCACGGATGGCACA
AAGGACAATCCATCGACTCCGCGCGTCAAACCACAGCCCGCGGTGCCTCCGCGACCCAGCTCGGACCTCA
TCCTGCACCGCTGCACAGAGAGCACCAAACGGAAGCTGACGTCCGCTGTGTGA

Translation (390 aa):
MGDTFIRHIALLGFEKRFIPSQHYVYMFLVKWQDLSEKVVYRKFTEIYEFHKMLKEMFPIEAGEIHTENR
VIPHLPAPRWFDGQRAAESRQGTLTEYFNGLMGLPVKISRCPHLLDFFKVRPDDLKLPTDSQAKKPETYL
VPKDGKNNVADITGPIILQTYRAIADYEKSSGTEMTVATGDVVDVVEKSESGWWFCQMKTKRGWVPASYL
EPLDSPDEAEDPDPNYAGEPYVTIKAYAAVEEDEMSLSEGEAIEVIHKLLDGWWVVRKGDITGYFPSMYL
QKAGEEITQAQRQIRGRGAPPRRSTIRNAQSIHQRSRKRLSQDTYRRNSVRFLQQRRRPGRPGPLSTDGT
KDNPSTPRVKPQPAVPPRPSSDLILHRCTESTKRKLTSAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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