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Report for CCDS21232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21232.1 Public Mus musculus 7 Pih1d1 23 108 98 CCDS HistoryNCBI Gene:68845Re-query CCDS DB by CCDS ID:21232.1Re-query CCDS DB by GeneID:68845See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21232.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085375.12 ENSMUSP00000082490.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085375.12Link to Ensembl Protein Viewer:ENSMUSP00000082490.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085375Re-query CCDS DB by Protein ID:ENSMUSP00000082490
Original member Current member EBI ENSMUST00000107811.3 ENSMUSP00000103441.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107811.3Link to Ensembl Protein Viewer:ENSMUSP00000103441.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107811Re-query CCDS DB by Protein ID:ENSMUSP00000103441
Original member Current member EBI ENSMUST00000210139.1 ENSMUSP00000148186.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210139.1Link to Ensembl Protein Viewer:ENSMUSP00000148186.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000210139Re-query CCDS DB by Protein ID:ENSMUSP00000148186
Original member Current member NCBI NM_001278207.1 NP_001265136.1 Accepted alive Link to Nucleotide Sequence:NM_001278207.1Link to Protein Sequence:NP_001265136.1Re-query CCDS DB by Nucleotide ID:NM_001278207Re-query CCDS DB by Protein ID:NP_001265136Link to BLAST:NP_001265136.1
Original member Current member NCBI NM_001285904.2 NP_001272833.1 Accepted alive Link to Nucleotide Sequence:NM_001285904.2Link to Protein Sequence:NP_001272833.1Re-query CCDS DB by Nucleotide ID:NM_001285904Re-query CCDS DB by Protein ID:NP_001272833Link to BLAST:NP_001272833.1
Original member Current member NCBI NM_029406.4 NP_083682.1 Accepted alive Link to Nucleotide Sequence:NM_029406.4Link to Protein Sequence:NP_083682.1Re-query CCDS DB by Nucleotide ID:NM_029406Re-query CCDS DB by Protein ID:NP_083682Link to BLAST:NP_083682.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265136.1 290 Q9CQJ2 290 100% 0 0
NP_001272833.1 290 Q9CQJ2 290 100% 0 0
NP_083682.1 290 Q9CQJ2 290 100% 0 0

Chromosomal Locations for CCDS 21232.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45156310 45156399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45156732 45156798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45157603 45157782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45158441 45158502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45158587 45158668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45158990 45159119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45159253 45159328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45159681 45159824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45159942 45159983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGGCGGACTCGACGTTTTTGGCACCAGAACTAAGCGACACAGAGTCGATGGGTGAAGAGACGGTGCGGT
TTCAGGAGCTGCTGCTGAAGGCTTCCAAAGAGCTCCAGCAAGCCCAGACAGCCAGGCCAGACTCTACACA
GATCCAGCCAAAGCCTGGTTTCTGTGTGAAGACCAACTCATCGGAAGGAAAGGTTTTCATCAACATCTGC
CACTCTCCCTCCATCCCTCCCCCGGCCGACGTGACTGAGGACGAGCTGCTGCAGATGCTGGAGGAGGACC
AGGCTGGCTTCCGAATCCCCATGAGCCTGGGAGAGCCGCACGCGGAGCTGGATGCAAAAGGCCAGGGCTG
TACTGCCTATGACGTCGCTGTCAATAGCAACTTCTACCTGAGGATGCAGAACAGTGATTTCTTGCGGGAA
CTGGTGGTCACCATCGCCAGGGAGGGCCTTGAGGACAAGTATGGCCTACAGCTAAATCCTGAATGGCGCA
TGTTGAAGTACCGGTCTTTCCTGGGCTCCATCTCACAGCAGAACATCCGTTCTCAGCAGCGACCTCGGAT
CCAGGAGCTGGGGACCCTGGATGCCAGTGGCTCACTGGGAACCTGTCATGGCCCAGAACGGCCTCACCTG
AACCTTTGGTTGGAAGCCCCTGACCTGCTCTTGGCTGAAGTTGACCTTCCTAAACTGGACGGCGCACAAG
GGCTGGCACTGGAAATAGGAGAGAACCGCCTGGTGATAGGAGGCCCCCAGCAACTGTATCATCTGGATGC
CACTGTTCCCCTGAGGATCAACAGTGAGGCAAGCAGGGCTGCTTTTCACCGCAGGAGGAAGCAACTGATG
GTGTCCATGCCCCTCCTGACAGCGTCTTCTTGA

Translation (290 aa):
MADSTFLAPELSDTESMGEETVRFQELLLKASKELQQAQTARPDSTQIQPKPGFCVKTNSSEGKVFINIC
HSPSIPPPADVTEDELLQMLEEDQAGFRIPMSLGEPHAELDAKGQGCTAYDVAVNSNFYLRMQNSDFLRE
LVVTIAREGLEDKYGLQLNPEWRMLKYRSFLGSISQQNIRSQQRPRIQELGTLDASGSLGTCHGPERPHL
NLWLEAPDLLLAEVDLPKLDGAQGLALEIGENRLVIGGPQQLYHLDATVPLRINSEASRAAFHRRRKQLM
VSMPLLTASS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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