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Report for CCDS28835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28835.1 Public Mus musculus 17 Mea1 23 108 98 CCDS HistoryNCBI Gene:17256Re-query CCDS DB by CCDS ID:28835.1Re-query CCDS DB by GeneID:17256See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28835.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002845.7 ENSMUSP00000002845.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002845.7Link to Ensembl Protein Viewer:ENSMUSP00000002845.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000002845Re-query CCDS DB by Protein ID:ENSMUSP00000002845
Original member Current member EBI ENSMUST00000232732.1 ENSMUSP00000156392.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232732.1Link to Ensembl Protein Viewer:ENSMUSP00000156392.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232732Re-query CCDS DB by Protein ID:ENSMUSP00000156392
Original member Current member EBI ENSMUST00000233491.1 ENSMUSP00000156439.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233491.1Link to Ensembl Protein Viewer:ENSMUSP00000156439.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233491Re-query CCDS DB by Protein ID:ENSMUSP00000156439
Original member Current member EBI ENSMUST00000233430.1 ENSMUSP00000156593.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233430.1Link to Ensembl Protein Viewer:ENSMUSP00000156593.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233430Re-query CCDS DB by Protein ID:ENSMUSP00000156593
Original member Current member EBI ENSMUST00000232762.1 ENSMUSP00000156895.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232762.1Link to Ensembl Protein Viewer:ENSMUSP00000156895.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232762Re-query CCDS DB by Protein ID:ENSMUSP00000156895
Original member Current member EBI ENSMUST00000233612.1 ENSMUSP00000156967.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233612.1Link to Ensembl Protein Viewer:ENSMUSP00000156967.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233612Re-query CCDS DB by Protein ID:ENSMUSP00000156967
Original member Current member NCBI NM_001277310.1 NP_001264239.1 Accepted alive Link to Nucleotide Sequence:NM_001277310.1Link to Protein Sequence:NP_001264239.1Re-query CCDS DB by Nucleotide ID:NM_001277310Re-query CCDS DB by Protein ID:NP_001264239Link to BLAST:NP_001264239.1
Original member Current member NCBI NM_001277311.1 NP_001264240.1 Accepted alive Link to Nucleotide Sequence:NM_001277311.1Link to Protein Sequence:NP_001264240.1Re-query CCDS DB by Nucleotide ID:NM_001277311Re-query CCDS DB by Protein ID:NP_001264240Link to BLAST:NP_001264240.1
Original member Current member NCBI NM_001277312.1 NP_001264241.1 Accepted alive Link to Nucleotide Sequence:NM_001277312.1Link to Protein Sequence:NP_001264241.1Re-query CCDS DB by Nucleotide ID:NM_001277312Re-query CCDS DB by Protein ID:NP_001264241Link to BLAST:NP_001264241.1
Original member Current member NCBI NM_010787.2 NP_034917.1 Accepted alive Link to Nucleotide Sequence:NM_010787.2Link to Protein Sequence:NP_034917.1Re-query CCDS DB by Nucleotide ID:NM_010787Re-query CCDS DB by Protein ID:NP_034917Link to BLAST:NP_034917.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264239.1 174 Q64327 174 100% 0 0
NP_001264240.1 174 Q64327 174 100% 0 0
NP_001264241.1 174 Q64327 174 100% 0 0
NP_034917.1 174 Q64327 174 100% 0 0

Chromosomal Locations for CCDS 28835.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46681628 46681897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46682009 46682111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46682719 46682870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGGCAGCAGTAGTTCTAGGGGGAGACACCATGGGCCCTGAGCGTATCTTCCCCAATCAGACTGAGGACT
TAGGGCCACATCAGGGTCCTACAGAAGGAACTGGGGATTGGAGCAGTGAAGAACCCGAGGAAGAGCAGGA
GGAAACAGGAGCAGGCCCAGCAGGCTACTCGTACCAGCCCCTCAATCAAGACCCTGAACAAGAAGAGGTG
GAATTGGCACCAGTGGGTGAAGGAGAAGATGGAGCTGCTGACATCCAAGATCGGATCCAGGCCCTGGGGC
TTCATCTGCCAGACCCTCCATTGGAGAGTGAGGATGAAGATGAGGAGGGAGCCGCCGCATTGAGCAGCCA
CAGCTCTATCCCCATGGACCCAGAACATGTAGAGCTGGTGAAAAGGACGATGGCTGGAGTAAGCCTGCCT
GCACCAGGGGTTCCTGCCTGGGCTCGGGAGATCTCGGACGCTCAGTGGGAAGATGTGGTACAGAAAGCCC
TCCAAGCCCGGCAGGCATCCCCTGCCTGGAAGTGA

Translation (174 aa):
MAAVVLGGDTMGPERIFPNQTEDLGPHQGPTEGTGDWSSEEPEEEQEETGAGPAGYSYQPLNQDPEQEEV
ELAPVGEGEDGAADIQDRIQALGLHLPDPPLESEDEDEEGAAALSSHSSIPMDPEHVELVKRTMAGVSLP
APGVPAWAREISDAQWEDVVQKALQARQASPAWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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