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Report for CCDS21926.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21926.1 Public Mus musculus 7 Fam53b 23 108 98 CCDS HistoryNCBI Gene:77938Re-query CCDS DB by CCDS ID:21926.1Re-query CCDS DB by GeneID:77938See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21926.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065371.13 ENSMUSP00000070763.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065371.13Link to Ensembl Protein Viewer:ENSMUSP00000070763.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000065371Re-query CCDS DB by Protein ID:ENSMUSP00000070763
Original member Current member EBI ENSMUST00000097999.8 ENSMUSP00000095608.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097999.8Link to Ensembl Protein Viewer:ENSMUSP00000095608.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097999Re-query CCDS DB by Protein ID:ENSMUSP00000095608
Original member Current member EBI ENSMUST00000106169.7 ENSMUSP00000101775.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106169.7Link to Ensembl Protein Viewer:ENSMUSP00000101775.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106169Re-query CCDS DB by Protein ID:ENSMUSP00000101775
Original member Current member NCBI NM_175268.4 NP_780477.2 Accepted alive Link to Nucleotide Sequence:NM_175268.4Link to Protein Sequence:NP_780477.2Re-query CCDS DB by Nucleotide ID:NM_175268Re-query CCDS DB by Protein ID:NP_780477Link to BLAST:NP_780477.2
Original member Current member NCBI NM_212473.1 NP_997638.1 Accepted alive Link to Nucleotide Sequence:NM_212473.1Link to Protein Sequence:NP_997638.1Re-query CCDS DB by Nucleotide ID:NM_212473Re-query CCDS DB by Protein ID:NP_997638Link to BLAST:NP_997638.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780477.2 422 Q8BGR5-1 422 100% 0 0
NP_997638.1 422 Q8BGR5-1 422 100% 0 0

Chromosomal Locations for CCDS 21926.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 132715643 132716002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132759389 132760167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132771578 132771629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 132779136 132779213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGGTGATGATCCTAAGGAGAAGCCTCATCAACCAGGGAGCTGACTCTGGAGCACACAGGACCTTCATCC
CTGAACTGCACACGCCAAAGATGAGTCAAGGACCTACCCTCCTTTCCTGTGGAATTATGGAAAATGACAG
ATGGCGAGACCTGGATAGAAAATGCCCTCTTCAGATTGACCAGCCAAGCGCCAGCATCTGGGAATGTCTG
CCTGAAAAGTGTCAGGATGGCTCCCTGTGGCACCAGGAGGCAGTGACTGCCTGTGCGGTGACCAGCCTAA
TCAAAGACCTCAACATAAATGACCACAATGGGAACCCCTCAGCTCCTCCCAGCAAACGCCAGTGCCGGTC
ACTATCCTTCTCTGATGAGATGTCCAGTTGCCGGACGTCATGGCGGCCCTTGGGGTCCAAAGTCTGGACT
CCCGTGGAGAAGAGACGATGCTACAGCGGAGGCAGCGTCCAGCGCTACTCCAATGGCGTCAGCCCCATGC
AGCGGAGCTCTAGCTTCAGCCTCCCTGCCAGGGCCAATGGGCTCTCTTCACCTTGCCACCAGTCGAGCCT
GCACCACCGCTTTGGGGGGCAACCCTGCCAAGGAGCACCAGGCTCAGCCCCCTGTGGACAGGCGGGTGAT
AGCTGGAGCCCAGACCCACACCCAGTGGGAGGGGGCCGGCTGGACCTGCAGCGGTCCCTCTCTTGCTCGC
ATGAGCAGTTTTCCTTCCCAGAATACTGTCCCCCCTCAGCCAACAGCACACCTGCCTCAACGCCAGAGCT
GGCAAGACGCTCCAGTGGGCTTGCCCGCAGCCGCTCTCAGCCCTGTGTCCTTAATGACAAGAAGATCGGT
GTGAAACGGCGGCGTCCGGATGAAGTGCAGGAGCAAAGACCTTCTCTAGACCTTGCCAAGATGGCACAGA
ACTGTCAGACCTTCAGCAGCCTCAGTTGCCTGAACATGGGGGTGGACGACCACAGCTCCCAGAGCCCCTT
TGCCCTCGTCAGCAGTACCCGATCCTGGACCGCATTGCTCTCAGCCTCCAGCCCAGGGGGCAGGACTCCT
GCTGGGACCCCAGTTCCTGAGCCTGTTCCCCACTCCTTTGATGACCAGTTCACCTGCCAGGAGGACCTAT
CCTGTGACGAGTCAGATGGCTGCAGTCTAGATGAGGATTGCTGCAGGAAGGGGGATCCGGCCACATCCTG
GCGGGACCGGGGAGCCTGCACGAACAGCCTCTGCTCTTTGGATGGCGAGCTGGACATTGAGCAGATAGAG
AACAACTGA

Translation (422 aa):
MVMILRRSLINQGADSGAHRTFIPELHTPKMSQGPTLLSCGIMENDRWRDLDRKCPLQIDQPSASIWECL
PEKCQDGSLWHQEAVTACAVTSLIKDLNINDHNGNPSAPPSKRQCRSLSFSDEMSSCRTSWRPLGSKVWT
PVEKRRCYSGGSVQRYSNGVSPMQRSSSFSLPARANGLSSPCHQSSLHHRFGGQPCQGAPGSAPCGQAGD
SWSPDPHPVGGGRLDLQRSLSCSHEQFSFPEYCPPSANSTPASTPELARRSSGLARSRSQPCVLNDKKIG
VKRRRPDEVQEQRPSLDLAKMAQNCQTFSSLSCLNMGVDDHSSQSPFALVSSTRSWTALLSASSPGGRTP
AGTPVPEPVPHSFDDQFTCQEDLSCDESDGCSLDEDCCRKGDPATSWRDRGACTNSLCSLDGELDIEQIE
NN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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