NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22605.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22605.1 Public Mus musculus 8 Agrp 23 108 98 CCDS HistoryNCBI Gene:11604Re-query CCDS DB by CCDS ID:22605.1Re-query CCDS DB by GeneID:11604See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22605.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005849.10 ENSMUSP00000005849.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005849.10Link to Ensembl Protein Viewer:ENSMUSP00000005849.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000005849Re-query CCDS DB by Protein ID:ENSMUSP00000005849
Original member Current member EBI ENSMUST00000194091.5 ENSMUSP00000142044.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194091.5Link to Ensembl Protein Viewer:ENSMUSP00000142044.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194091Re-query CCDS DB by Protein ID:ENSMUSP00000142044
Original member Current member NCBI NM_001271806.1 NP_001258735.1 Accepted alive Link to Nucleotide Sequence:NM_001271806.1Link to Protein Sequence:NP_001258735.1Re-query CCDS DB by Nucleotide ID:NM_001271806Re-query CCDS DB by Protein ID:NP_001258735Link to BLAST:NP_001258735.1
Original member Current member NCBI NM_007427.3 NP_031453.1 Accepted alive Link to Nucleotide Sequence:NM_007427.3Link to Protein Sequence:NP_031453.1Re-query CCDS DB by Nucleotide ID:NM_007427Re-query CCDS DB by Protein ID:NP_031453Link to BLAST:NP_031453.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258735.1 131 P56473 131 100% 0 0
NP_031453.1 131 P56473 131 100% 0 0

Chromosomal Locations for CCDS 22605.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105566756 105566938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105567120 105567202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105567360 105567489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGCTGACTGCAATGTTGCTGAGTTGTGTTCTGCTGTTGGCACTGCCTCCCACACTGGGGGTCCAGATGG
GCGTGGCTCCACTGAAGGGCATCAGAAGGCCTGACCAGGCTCTGTTCCCAGAGTTCCCAGGTCTAAGTCT
GAATGGCCTCAAGAAGACAACTGCAGACCGAGCAGAAGAAGTTCTGCTGCAGAAGGCAGAAGCTTTGGCG
GAGGTGCTAGATCCACAGAACCGCGAGTCTCGTTCTCCGCGTCGCTGTGTAAGGCTGCACGAGTCCTGCT
TGGGACAGCAGGTACCTTGCTGCGACCCGTGCGCTACGTGCTACTGCCGCTTCTTCAATGCCTTTTGCTA
CTGCCGCAAGCTGGGTACGGCCACGAACCTCTGTAGTCGCACCTAG

Translation (131 aa):
MLTAMLLSCVLLLALPPTLGVQMGVAPLKGIRRPDQALFPEFPGLSLNGLKKTTADRAEEVLLQKAEALA
EVLDPQNRESRSPRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCRKLGTATNLCSRT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH