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Report for CCDS19407.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19407.1 Public Mus musculus 5 Gc 23 108 98 CCDS HistoryNCBI Gene:14473Re-query CCDS DB by CCDS ID:19407.1Re-query CCDS DB by GeneID:14473See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19407.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049209.12 ENSMUSP00000046636.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049209.12Link to Ensembl Protein Viewer:ENSMUSP00000046636.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000049209Re-query CCDS DB by Protein ID:ENSMUSP00000046636
Original member Current member NCBI NM_008096.2 NP_032122.1 Accepted alive Link to Nucleotide Sequence:NM_008096.2Link to Protein Sequence:NP_032122.1Re-query CCDS DB by Nucleotide ID:NM_008096Re-query CCDS DB by Protein ID:NP_032122Link to BLAST:NP_032122.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032122.1 476 P21614 476 100% 0 0

Chromosomal Locations for CCDS 19407.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 89422081 89422116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89426037 89426169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89434951 89435048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89435519 89435648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89438246 89438448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89439533 89439662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89441202 89441296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89441563 89441695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89443405 89443616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89445298 89445430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89446500 89446569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 89457661 89457718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGAAGAGGGTTCTGGTTCTCCTGCTGGCCTTAGCCTTTGGGCACGCTCTAGAGAGAGGCCGAGACTATG
AGAAGGATAAAGTTTGCAATGAACTCGCCATGCTGGGGAAAGAGGACTTCAGATCTTTATCACTAATCCT
ATATAGCAGGAAGTTTTCCAGTAGCACATTTGAGCAGGTCAACCAGCTTGTGAAGGAAGTTGTCTCCTTG
ACTGAGGAGTGCTGTGCTGAGGGAGCTGACCCCACCTGCTACGACACCAGGACCTCAGAGCTGTCTGTTA
AGTCCTGTGAAAGTGATGCTCCCTTTCCGGTTCACCCTGGAACTCCTGAGTGTTGCACCAAGGAGGGGCT
GGAGCGGAAACTCTGCATGGCTGCCCTCAGTCACCAGCCGCAGGAATTTCCCACCTACGTGGAACCAACA
AATGATGAGATCTGTGAGGCCTTCAGGAGGGACCCAAAGGGATTTGCTGACCAGTTTCTGTATGAGTATT
CCAGCAATTATGGACAAGCGCCTCTGCCACTTTTAGTTGCTTACACCAAGAATTATCTCTCTATGGTTGG
ATCCTGCTGTACTTCTGCAAACCCAACTGTATGCTTTGTGAAGGAGAGACTCCAGATGAAGCATTTGTCA
CTTCTCACCACCATGTCAAACAGAGTCTGCTCACAATATGCTGCATATGGAAAGGAAAAATCAAGGCTGA
GCCATCTCATAAAACTAGCCCAAAAAGTGCCAACTGCTAACCTGGAGAACGTTCTGCCACTAGCTGAAGA
CTTTACTGAAATCCTGTCCAGATGTTGTGAGTCTACCTCAGAGGATTGCATGGCCAGTGAGCTGCCTGAG
CACACAATAAAAATCTGTCAAAACTTATCCAAAAAGAATTCTAAGTTTGAAGAGTGCTGTCAAGAAAACA
CACCCATGAACATTTTTATGTGCACCTACTTCATGCCAGCTGCTGAACCACTTCAATTGCCAGCTATCAA
GTTGCCAACTGGCAAAGACCTCTGTGGTCAGAGTACCACACAAGCCATGGACCAGTATACATTTGAACTA
AGCAGAAGGACTCAAGTTCCAGAAGTGTTCCTCAGCAAAGTTCTGGAGCCAACCCTGAAAACCCTTAGGG
AGTGCTGTGACACTCAGGATTCTGTTGCCTGTTTCAGCACTCAGAGTCCCCTGCTGAAGAGGCAACTAAC
TTCTTTCATCGAAAAAGGTCAAGAAATGTGTGCAGATTATTCTGAGAACACATTTACTGAGTACAAGAAA
AAATTGGCAGAACGGCTAAGGACAAAAACACCCAACACCTCTCCGGCAGAGCTGAAAGACATGGTGGAGA
AACACTCGGACTTTGCCTCTAAGTGCTGCTCTATAAACTCACCTCCTCTCTACTGCAGCTCACAGATTGA
TGCAGAAATGATAGACACCCTGCAGTCCTGA

Translation (476 aa):
MKRVLVLLLALAFGHALERGRDYEKDKVCNELAMLGKEDFRSLSLILYSRKFSSSTFEQVNQLVKEVVSL
TEECCAEGADPTCYDTRTSELSVKSCESDAPFPVHPGTPECCTKEGLERKLCMAALSHQPQEFPTYVEPT
NDEICEAFRRDPKGFADQFLYEYSSNYGQAPLPLLVAYTKNYLSMVGSCCTSANPTVCFVKERLQMKHLS
LLTTMSNRVCSQYAAYGKEKSRLSHLIKLAQKVPTANLENVLPLAEDFTEILSRCCESTSEDCMASELPE
HTIKICQNLSKKNSKFEECCQENTPMNIFMCTYFMPAAEPLQLPAIKLPTGKDLCGQSTTQAMDQYTFEL
SRRTQVPEVFLSKVLEPTLKTLRECCDTQDSVACFSTQSPLLKRQLTSFIEKGQEMCADYSENTFTEYKK
KLAERLRTKTPNTSPAELKDMVEKHSDFASKCCSINSPPLYCSSQIDAEMIDTLQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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