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Report for CCDS16923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16923.1 Public Mus musculus 2 Bpifa2 23 108 98 CCDS HistoryNCBI Gene:19194Re-query CCDS DB by CCDS ID:16923.1Re-query CCDS DB by GeneID:19194See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16923.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048103.8 ENSMUSP00000046080.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048103.8Link to Ensembl Protein Viewer:ENSMUSP00000046080.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000048103Re-query CCDS DB by Protein ID:ENSMUSP00000046080
Original member Current member NCBI NM_008953.2 NP_032979.1 Accepted alive Link to Nucleotide Sequence:NM_008953.2Link to Protein Sequence:NP_032979.1Re-query CCDS DB by Nucleotide ID:NM_008953Re-query CCDS DB by Protein ID:NP_032979Link to BLAST:NP_032979.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032979.1 235 P07743 235 100% 0 0

Chromosomal Locations for CCDS 16923.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 154009121 154009241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154009767 154009908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154010469 154010576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154011350 154011502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154013681 154013762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154014417 154014480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154014925 154014962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (708 nt):
ATGTTCCAACTTGGGAGCCTTGTTGTCTTGTGTGGCCTGCTCATTGGGAACTCAGAGTCACTTCTTGGTG
AACTTGGCAGCGCTGTGAATAATTTGAAAATTCTGAATCCTCCCTCTGAAGCTGTCCCTCAGAACCTGAA
TCTGGATGTGGAGTTGCTTCAGCAAGCCACAAGTTGGCCATTAGCCAAGAACAGCATTCTAGAAACGTTG
AACACAGCGGACCTTGGCAATTTAAAAAGCTTTACATCTTTGAATGGTTTATTGTTGAAAATCAATAATC
TCAAAGTCCTGGATTTTCAAGCTAAGCTGTCTTCCAACGGCAATGGCATTGATCTGACGGTGCCCTTGGC
TGGGGAAGCCTCCTTGGTTCTGCCTTTCATTGGCAAGACGGTCGACATTTCTGTTTCCTTGGACCTCATA
AATTCACTCTCCATTAAAACCAATGCCCAGACTGGCCTTCCTGAGGTGACCATAGGCAAATGCTCCAGTA
ATACAGATAAAATCTCCATTTCCTTGTTGGGAAGACGATTACCCATCATCAACAGTATTCTGGATGGTGT
CTCTACCCTCCTTACAAGTACATTGTCAACCGTCCTGCAAAACTTCCTATGTCCATTGCTTCAGTACGTC
CTCAGCACACTGAATCCAAGTGTTCTTCAGGGTCTCCTCTCTAATCTACTGGCAGGACAGGTACAACTTG
CCCTCTGA

Translation (235 aa):
MFQLGSLVVLCGLLIGNSESLLGELGSAVNNLKILNPPSEAVPQNLNLDVELLQQATSWPLAKNSILETL
NTADLGNLKSFTSLNGLLLKINNLKVLDFQAKLSSNGNGIDLTVPLAGEASLVLPFIGKTVDISVSLDLI
NSLSIKTNAQTGLPEVTIGKCSSNTDKISISLLGRRLPIINSILDGVSTLLTSTLSTVLQNFLCPLLQYV
LSTLNPSVLQGLLSNLLAGQVQLAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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