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Report for CCDS29558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29558.1 Public Mus musculus 19 B3gat3 23 108 98 CCDS HistoryNCBI Gene:72727Re-query CCDS DB by CCDS ID:29558.1Re-query CCDS DB by GeneID:72727See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29558.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000096243.6 ENSMUSP00000093962.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000096243.6Link to Ensembl Protein Viewer:ENSMUSP00000093962.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000096243Re-query CCDS DB by Protein ID:ENSMUSP00000093962
Original member Current member NCBI NM_024256.2 NP_077218.1 Accepted alive Link to Nucleotide Sequence:NM_024256.2Link to Protein Sequence:NP_077218.1Re-query CCDS DB by Nucleotide ID:NM_024256Re-query CCDS DB by Protein ID:NP_077218Link to BLAST:NP_077218.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077218.1 335 P58158 335 100% 0 0

Chromosomal Locations for CCDS 29558.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 8920567 8920648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8921806 8921980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8925538 8925898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8926082 8926372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 8926736 8926834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGAAGCTGAAGCTGAAGAACGTGTTTCTTGCCTACTTCCTGGTGTCGATCGCCGGCCTCCTCTACGCTC
TGGTGCAGCTCGGCCAGCCTTGCGACTGCCTCCCTCCGCTTCGAGCTGCAGCTGAGCAGCTTCGGCAGAA
GGACCTGAGGATATCCCAGTTGCAAGCTGATCTCCGTCGCCCACCCCCTGTCCCAGCCCAGCCCCCTGAA
CCTGAGGCCCTGCCTACTATCTATGTCATTACCCCCACCTACGCCAGGCTGGTACAAAAGGCAGAGCTGG
TTCGGCTGTCCCAGACCCTGAGCTTGGTGCCCCGTCTACACTGGCTGCTAGTGGAGGACGCTGAGAGCCC
TACCCCGCTGGTCTCGGGGCTGTTGGCCGCCTCTGGTCTCCTCTTTACACACCTGGCTGTCCTTACCCCC
AAGGCTCAACGGCTTAGGGAAGGTGAGCCAGGCTGGGTCCGGCCCCGAGGAGTGGAACAGCGCAATAAGG
CCCTCGACTGGCTCCGAGGAAAAGGGGGTGCTGTTGGGGGGGAGAAGGATCCACCGCCACCAGGGACCCA
AGGAGTCGTGTATTTTGCTGACGATGACAACACCTACAGCCGGGAGCTCTTTAAGGAGATGCGTTGGACT
CGCGGTGTCTCAGTGTGGCCTGTGGGGCTGGTGGGTGGCCTGCGATTTGAAGGTCCTCAGGTACAGGATG
GCCGCGTTGTGGGTTTCCACACAGCATGGGAACCCAACAGGCCCTTTCCCTTGGACATGGCGGGATTTGC
GGTTGCCCTGCCCTTGCTATTGGCTAAGCCCAATGCCCAGTTTGATGCTACTGCACCCCGGGGCCACCTG
GAAAGTAGTCTCCTGAGCCACCTTGTAGATCCCAAGGACCTGGAGCCACGGGCTGCCAATTGTACTCAGG
TACTGGTATGGCACACCCGGACAGAGAAACCTAAGATGAAGCAGGAGGAGCAGCTACAACGGCAGGGCCA
GGGCTCAGACCCAGCCATTGAGGTGTGA

Translation (335 aa):
MKLKLKNVFLAYFLVSIAGLLYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQADLRRPPPVPAQPPE
PEALPTIYVITPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAESPTPLVSGLLAASGLLFTHLAVLTP
KAQRLREGEPGWVRPRGVEQRNKALDWLRGKGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFKEMRWT
RGVSVWPVGLVGGLRFEGPQVQDGRVVGFHTAWEPNRPFPLDMAGFAVALPLLLAKPNAQFDATAPRGHL
ESSLLSHLVDPKDLEPRAANCTQVLVWHTRTEKPKMKQEEQLQRQGQGSDPAIEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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