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Report for CCDS85616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85616.1 Public Mus musculus 8 Bcar1 23 108 98 CCDS HistoryNCBI Gene:12927Re-query CCDS DB by CCDS ID:85616.1Re-query CCDS DB by GeneID:12927See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000212349.1 ENSMUSP00000148364.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212349.1Link to Ensembl Protein Viewer:ENSMUSP00000148364.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212349Re-query CCDS DB by Protein ID:ENSMUSP00000148364
Original member Current member NCBI NM_001198839.1 NP_001185768.1 Accepted alive Link to Nucleotide Sequence:NM_001198839.1Link to Protein Sequence:NP_001185768.1Re-query CCDS DB by Nucleotide ID:NM_001198839Re-query CCDS DB by Protein ID:NP_001185768Link to BLAST:NP_001185768.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185768.1 874 Q61140-2 874 100% 0 0

Chromosomal Locations for CCDS 85616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 111710882 111711394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111712601 111712690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111713339 111714436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111715283 111715399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111715615 111715776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111720699 111721331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 111732039 111732050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2625 nt):
ATGAAGTACCTGAACGTGCTGGCCAAAGCCCTCTATGACAATGTTGCTGAATCCCCGGATGAGCTCTCCT
TCCGAAAGGGTGACATCATGACAGTGCTCGAGCGGGACACTCAGGGCCTGGATGGCTGGTGGCTCTGCTC
ACTGCATGGGCGCCAGGGCATTGTGCCTGGTAACCGCCTCAAGATTCTGGTTGGCATGTATGATAAGAAG
CCAGTAGGACCTGGACCAGGCCCACCTGCCACCCCACCCCAGCCCCAGCCCAGCCTTCCCCAGGGCGTCC
ATGCTCCGGTACCTCCAGCTTCCCAGTACAGTCCCATGCTCCCCACTGCGTACCAGCCCCAGTCTGACAA
TGTGTACCTGGTACCCACTCCCAGCAAGACTCAGCAAGGTCTCTACCAAGCCCCTGGGCCCAACCCACAG
TTCCAGTCACCCCCAGCCAAACAGACGTCCACATTCTCCAAGCAAACACCTCATCACTCATTTCCCAGCC
CAGCCACGGACCTTTACCAGGTGCCCCCAGGGCCTGGAAGTCCAGCCCAGGACATTTATCAGGTGCCACC
TTCCGCTGGCATAGGGCATGACATCTACCAAGTTCCTCCATCTCTGGACACTCGCGGATGGGAGGGAACA
AAGCCACCGGCAAAGGTGGTGGTTCCTACGCGAGTGGGACAGGGCTATGTGTATGAGGCCGCTCAGACGG
AGCAGGATGAGTACGACACCCCACGCCACCTGCTGGCCCCAGGTCCCCAGGACATCTATGATGTGCCCCC
TGTTCGAGGACTGCTTCCTAACCAGTATGGCCAGGAGGTATATGACACGCCCCCTATGGCAGTCAAAGGC
CCCAATGGCCGAGACCCATTGTTGGATGTGTATGACGTGCCCCCTAGTGTGGAGAAAGGCCTGCTCTCGT
CCAGCCATCATTCGGTGTATGATGTTCCTCCTTCTGTGAGCAAGGATGTGCCCGATGGCCCACTGCTGCG
TGAGGAAACCTATGATGTACCTCCTGCCTTCGCCAAGCCCAAGCCCTTTGATCCCACCCGACACCCACTG
ATCCTTGCTGCGCCTCCTCCCGACTCCCCAGCAGCTGAGGATGTATATGATGTGCCCCCCCCTGCTCCCG
ACCTCTATGATGTGCCCCCTGGTTTGCGGCGGCCTGGCCCTGGAACACTGTATGACGTGCCTCGCGAGCG
CGTGCTCCCTCCTGAGGTGGCTGATGGGAGTGTAGTTGACGATGGTGTGTATGCTGTGCCCCCACCAGCC
GAGCGAGAGGCCCCAACGGATGGCAAGCGCCTGTCGGCCTCTAGCACGGGCAGCACGCGCAGCAGCCAAT
CGGCATCTTCCTTGGAGGTGGTGGTGCCAGGCCGGGAGCCCCTGGAACTGGAGGTTGCTGTGGAGTCCCT
GGCTCGGCTGCAGCAAGGCGTGAGCACCACCGTAGCCCACCTTCTGGACCTGGTGGGCAGTGCCAGTGGG
CCTGGGGGCTGGCGTGGTACCTCTGAGCCTCAGGAGCCTCCCGCACAGGACCTGAAAGCCGCAGTGGCGG
CAGTTCACGGGGCAGTCCATGAGCTCCTGGAGTTCGCCCGCGGAGCTGTGAGCAATGCCACCCACACTTC
TGACCGCACCTTGCATGCCAAGCTTAGCCGGCAACTACAGAAGATGGAGGATGTGTACCAGACACTGGTG
GTCCACGGTCAGGTCCTTGACAGTGGCCGAGGAAGTCCAGGATTCACTCCGGAAGACCTGGACCGCCTGG
TGGCCTGCTCTCGGGCTGTGCCCGAGGATGCCAAGCAGCTAGCTTCCTTTTTGCATGGCAATGCCTCGCT
GCTTTTCAGACGGACCAAAGCCCCTGGCCCAGGGCCTGAGGGAAGCAGCTCCCTGCACCCAAACCCCACT
GATAAAGCCAGTAGCATCCAGTCACGCCCTCTCCCCTCACCTCCAAAGTTCACCTCCCAGGACTCTCCAG
ACGGCCAGTATGAGAACAGTGAAGGGGGTTGGATGGAGGACTATGACTACGTCCATCTGCAGGGGAAGGA
GGAATTTGAGAAGACCCAGAAGGAGCTGCTAGAAAGGGGTAACATCATGCGGCAGGGAAAGGGCCAACTG
GAGTTGCAGCAGCTGAAACAGTTTGAGCGACTGGAGCAGGAGGTGTCTCGTCCAATAGACCACGACCTGG
CCAACTGGACACCAGCCCAGCCCCTGGTGCCGGGCCGGACAGGGGGCCTGGGGCCTTCAGACCGACAGCT
GCTGCTCTTCTACTTGGAGCAGTGCGAGGCCAACCTGACCACACTGACAGATGCAGTGGACGCCTTCTTC
ACTGCGGTGGCCACCAACCAACCACCCAAGATCTTTGTGGCACACAGCAAGTTTGTCATTCTCAGTGCCC
ACAAGCTTGTGTTCATTGGGGACACACTGTCACGGCAGGCAAAGGCAGCTGATGTCCGAAGCCAAGTGAC
CCACTACAGCAATCTGCTGTGTGACCTCCTGCGTGGCATTGTGGCCACCACCAAGGCTGCTGCCCTGCAG
TACCCATCCCCTTCCGCTGCCCAGGACATGGTGGACAGGGTCAAGGAGCTAGGCCACAGCACTCAGCAGT
TCCGCCGCGTCCTGGGCCAGCTAGCTGCTGCCTGA

Translation (874 aa):
MKYLNVLAKALYDNVAESPDELSFRKGDIMTVLERDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYDKK
PVGPGPGPPATPPQPQPSLPQGVHAPVPPASQYSPMLPTAYQPQSDNVYLVPTPSKTQQGLYQAPGPNPQ
FQSPPAKQTSTFSKQTPHHSFPSPATDLYQVPPGPGSPAQDIYQVPPSAGIGHDIYQVPPSLDTRGWEGT
KPPAKVVVPTRVGQGYVYEAAQTEQDEYDTPRHLLAPGPQDIYDVPPVRGLLPNQYGQEVYDTPPMAVKG
PNGRDPLLDVYDVPPSVEKGLLSSSHHSVYDVPPSVSKDVPDGPLLREETYDVPPAFAKPKPFDPTRHPL
ILAAPPPDSPAAEDVYDVPPPAPDLYDVPPGLRRPGPGTLYDVPRERVLPPEVADGSVVDDGVYAVPPPA
EREAPTDGKRLSASSTGSTRSSQSASSLEVVVPGREPLELEVAVESLARLQQGVSTTVAHLLDLVGSASG
PGGWRGTSEPQEPPAQDLKAAVAAVHGAVHELLEFARGAVSNATHTSDRTLHAKLSRQLQKMEDVYQTLV
VHGQVLDSGRGSPGFTPEDLDRLVACSRAVPEDAKQLASFLHGNASLLFRRTKAPGPGPEGSSSLHPNPT
DKASSIQSRPLPSPPKFTSQDSPDGQYENSEGGWMEDYDYVHLQGKEEFEKTQKELLERGNIMRQGKGQL
ELQQLKQFERLEQEVSRPIDHDLANWTPAQPLVPGRTGGLGPSDRQLLLFYLEQCEANLTTLTDAVDAFF
TAVATNQPPKIFVAHSKFVILSAHKLVFIGDTLSRQAKAADVRSQVTHYSNLLCDLLRGIVATTKAAALQ
YPSPSAAQDMVDRVKELGHSTQQFRRVLGQLAAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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