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Report for CCDS57400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57400.1 Public Mus musculus 5 Rnf216 23 108 98 CCDS HistoryNCBI Gene:108086Re-query CCDS DB by CCDS ID:57400.1Re-query CCDS DB by GeneID:108086See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57400.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000200607.4 ENSMUSP00000143705.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200607.4Link to Ensembl Protein Viewer:ENSMUSP00000143705.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200607Re-query CCDS DB by Protein ID:ENSMUSP00000143705
Original member Current member NCBI NM_207110.1 NP_996993.1 Accepted alive Link to Nucleotide Sequence:NM_207110.1Link to Protein Sequence:NP_996993.1Re-query CCDS DB by Nucleotide ID:NM_207110Re-query CCDS DB by Protein ID:NP_996993Link to BLAST:NP_996993.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996993.1 910 P58283-2 910 100% 0 0

Chromosomal Locations for CCDS 57400.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 142992649 142992965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 142993502 142993571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143015624 143015846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143027946 143028043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143068317 143068395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143068846 143068994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143075727 143075864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143077427 143077477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143080224 143080363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143080963 143081077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143085871 143086035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143087519 143087621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143089743 143089819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143090120 143090929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143092995 143093125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143098379 143098445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2733 nt):
ATGGCAGAGGGAAACAACAAAGAGGAGGTCATTCACTTGAACAACTTTCCCTGCCACCGGGGAAAGGAAT
GGATGGCTGTCAGAGAGGGGCCCATCACCATATCTGACTCCTCTGATGAGGAAGGGATTCCAATGCTGGT
TACCCCAGCTACAGAGCAACAGGAAGACGACCTGGATGATGATGTCATCCTGACAGAAACACATAAACCT
CAGACATCCCGGCCCAATCTCATCAAACCAGCTGCCCAGTGGCAAGATCTGAACAGATTGGGAGAAGAAA
GGCCTAGAAAATCTAGAGCAGACTTTGAAGCAGATATCCACAACTATTTTTCCTTTTGTAACAACTCATT
GTTTGGTTCTGGGGCACAGGATGATTCTGAGGATGAATATGGTGGATTTCTGGATCTTGAGAGTGGCAAA
AAAGAGGGAGAAGCCAAACCTGGACCAAGCAGTAAGCAGACAGCAGACGATATTGTCAACCCCAGATTGG
AGCAGAAAGTCATTATATTGGGAGAAAATGGTCTTCTTTTCCCAGAAAGTGAGCCTTTGGAAGTTCAGAA
CCAATCATCCGAAGACTCAGAGACAGAGCTCTTATCAAATCCTGGAGAGCCAGCTGCCTCAGTAGATGAC
CAGCTAATTGGAGAAGAGTACTGGCTTGACCATCCATACTTCCAGGCTCCGAATCCACAGCCTCAGGAAA
GAACAAACCAGGTTGTGCCCCAAGAGCGACATTCTGAATCAGAAATGGGCCCAATGTTTTTCCGCCATGA
TTTCCCAGAGCCAGCTTTTCCAAGGCCAGAACCCCAGCAGGAGGGGATTCCAGGCCCTGCTTCTCCACAG
CCAGCCCATCCTCTAGGAGAGCTTGAAGACCAGCAGTTAGCAATTGATGAAGACCCTGGGCCAGCCTTCC
CCCTGTCAGGACCTCAGGAGGCCAACTTGGCAAACATGTGGGAACAAGAAGCTGCTGAGGTAGATCAAGA
CCTCATTCCACTGTTAGTGAAAGAAACGGAAGCAAGATTTCCAGATGTAGCAAGTGGATATGTTGAAGAA
ATAATTCATTTGAAAAATTACTATGATTTGAATGTACTTTGTAATTTTCTTCTGGAAAACCCAGATTATC
CAAAGAGAGAAGACCGGCTTATTATCCACCCCAGCAGCAGCCTGCTTGCCAGCCAGGATGACGCGAAGTT
GCCTAAAATAGACTTTTTTGACTATTCCAAATTGACTCCACTTGACCAGCGCTGCTTCATCCAAGCTGCT
GACCTCCTGATGGCTGATTTCAAGATGCTTAGCAGCCAGGACATCAAGTGGGCCCTTCATGAGCTCAAAG
GACACTATGCAATCACCCGAAAGGCCTTTTCCGATGCCATTAAGAAATGGCAGGAGTTGTCACCTGAAAC
CAGTGGAAAACGGAAAAAGAGGAAAGAAATGAATCAGTATTCTTTCATAGATTTCAAGTTTGAACAAGGA
AACATAAAAATAGAAAAGAGGATGTTCTTTCTGGAAAACAAGCGTCGACACTGTAGGTACTATGACCATC
AGGCCCTCCTTCCAGCTGTGAAACAGGAGCAGGAATTCTATGAGCAGAAAATTAAAGAGATGGCAGAGCA
TGAAGACTTCTTGCTCGCCCTGCAGATGAATGAAGAACAGTATCAAAAGGATGGCCAGCTGATTGAATGC
CGCTGTTGCTATGGGGAGTTTCCATTTGAGGAGCTGACACAATGCGCCGATGCTCACTTGTTCTGCAAAG
AATGTCTCATCAGATATGCCCAGGAGGCAGTGTTTGGATCTGGAAAGTCAGAACTCAGCTGCATGGAAGG
CAGCTGCACGTGCTCCTTCCCAACCAGTGAGCTGGAGAAGGTGCTCCCCCAGACCATTCTGTACAAATAC
TATGAACGGAAAGCTGAGGAAGAAGTCGCTGCAGCCTATGCTGATGAGCTTGTCCGGTGCCCCTCCTGCA
GCTTCCCTGCTCTGTTGGACAGCGATGTGAAGAGGTTCAGCTGCCCCAACCCACGCTGCCGAAAGGAGAC
CTGTAGGAAGTGTCAGGGACTCTGGAAAGAACACAACGGCCTCACCTGTGAAGAGCTGGCAGAAAAGGAT
GACATCAAGTACCGGACATCCATTGAAGAAAAAATGACTGCTGCTCGGATTAGAAAATGTCACAAGTGTG
GAACTGGCCTCATCAAGTCTGAAGGCTGCAACCGCATGTCTTGCCGCTGTGGTGCCCAGATGTGCTACCT
CTGTCGAGTTTCTATCAATGGCTATGACCATTTCTGCCAGCATCCTCGCTCTCCAGGAGCCCCTTGCCAA
GAATGTTCCAGGTGCTCCCTGTGGACCGACCCCACTGAAGATGATGAAAAGCTGATTGAGGAAATCCAAA
AGGAGGCCGAGGAGGAACAGAAGAGAAAGAATGGAGAGAACACCTTCAAACGCATCGGGCCCCCACTGGA
GAAGCCAGCTGAGAAGGTGCAGCGTGTGGAAGCCCTGCCGCGGCCTGTCCCACAGAACCTGCATCCTCAG
ATGCCGCCCTATGCCTTTGTTCACCCACCCTTCCCCCTGCCACCTGTGCGGCCCGTGTTCAACAACTTCC
CCATCAACATGGGTCCTGTGCCCGCTCCCTATGTCCCCCCTCTGCCCAACGTGCGTGTCAACTATGACTT
TGGCCACATGCACGTGCCCCTGGAGCACAACCTGCCCATGCACTTTGGCCCCCAACCACGGCATCGCTTC
TGA

Translation (910 aa):
MAEGNNKEEVIHLNNFPCHRGKEWMAVREGPITISDSSDEEGIPMLVTPATEQQEDDLDDDVILTETHKP
QTSRPNLIKPAAQWQDLNRLGEERPRKSRADFEADIHNYFSFCNNSLFGSGAQDDSEDEYGGFLDLESGK
KEGEAKPGPSSKQTADDIVNPRLEQKVIILGENGLLFPESEPLEVQNQSSEDSETELLSNPGEPAASVDD
QLIGEEYWLDHPYFQAPNPQPQERTNQVVPQERHSESEMGPMFFRHDFPEPAFPRPEPQQEGIPGPASPQ
PAHPLGELEDQQLAIDEDPGPAFPLSGPQEANLANMWEQEAAEVDQDLIPLLVKETEARFPDVASGYVEE
IIHLKNYYDLNVLCNFLLENPDYPKREDRLIIHPSSSLLASQDDAKLPKIDFFDYSKLTPLDQRCFIQAA
DLLMADFKMLSSQDIKWALHELKGHYAITRKAFSDAIKKWQELSPETSGKRKKRKEMNQYSFIDFKFEQG
NIKIEKRMFFLENKRRHCRYYDHQALLPAVKQEQEFYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIEC
RCCYGEFPFEELTQCADAHLFCKECLIRYAQEAVFGSGKSELSCMEGSCTCSFPTSELEKVLPQTILYKY
YERKAEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPRCRKETCRKCQGLWKEHNGLTCEELAEKD
DIKYRTSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAPCQ
ECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPAEKVQRVEALPRPVPQNLHPQ
MPPYAFVHPPFPLPPVRPVFNNFPINMGPVPAPYVPPLPNVRVNYDFGHMHVPLEHNLPMHFGPQPRHRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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