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Report for CCDS24453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24453.1 Public Mus musculus 11 Meis1 23 108 98 CCDS HistoryNCBI Gene:17268Re-query CCDS DB by CCDS ID:24453.1Re-query CCDS DB by GeneID:17268See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24453.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000185131.7 ENSMUSP00000139219.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185131.7Link to Ensembl Protein Viewer:ENSMUSP00000139219.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185131Re-query CCDS DB by Protein ID:ENSMUSP00000139219
Original member Current member NCBI NM_010789.3 NP_034919.1 Accepted alive Link to Nucleotide Sequence:NM_010789.3Link to Protein Sequence:NP_034919.1Re-query CCDS DB by Nucleotide ID:NM_010789Re-query CCDS DB by Protein ID:NP_034919Link to BLAST:NP_034919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034919.1 465 Q60954-2 465 100% 0 0

Chromosomal Locations for CCDS 24453.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 18881639 18881922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18884387 18884476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18885593 18885651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18905689 18905765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18941659 18941804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 18988268 18988379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19011242 19011388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19012810 19012860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19013632 19013682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19014250 19014391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19016133 19016359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 19018221 19018232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGCGCAAAGGTACGACGACCTACCCCATTATGGGGGTATGGATGGAGTAGGCATCCCCTCCACGATGT
ATGGGGACCCGCATGCAGCCAGGTCCATGCAACCGGTCCACCACCTGAACCACGGGCCTCCTCTGCACTC
GCATCAGTACCCGCACACAGCTCACACCAACGCCATGGCCCCCAGCATGGGTTCCTCGGTCAATGACGCT
TTAAAGAGAGATAAAGATGCCATTTATGGACACCCCCTCTTCCCTCTCTTAGCACTGATTTTTGAGAAAT
GTGAATTAGCTACTTGTACCCCCCGCGAGCCGGGGGTGGCGGGCGGGGACGTCTGCTCGTCAGAGTCATT
CAATGAAGATATAGCGGTGTTCGCCAAACAGATTCGCGCAGAAAAACCTCTATTCTCTTCTAATCCAGAA
CTGGATAACTTGATGATTCAAGCCATACAAGTGTTAAGGTTTCATCTGTTGGAATTAGAGAAGGTACACG
AATTATGTGACAATTTCTGCCACCGGTATATTAGCTGTTTGAAAGGGAAAATGCCTATCGATTTGGTGAT
AGATGATAGAGAAGGAGGATCAAAATCAGACAGTGAAGATGTAACAAGATCAGCAAATCTAACTGACCAG
CCCTCTTGGAATAGAGACCATGATGACACGGCATCCACTCGTTCAGGAGGAACCCCGGGCCCTTCCAGCG
GTGGCCATACTTCACACAGTGGGGATAACAGCAGTGAGCAAGGTGATGGCTTGGACAACAGTGTAGCTTC
CCCCAGCACAGGTGACGATGATGACCCTGATAAGGACAAAAAGCGTCACAAAAAGCGTGGCATCTTTCCC
AAAGTAGCCACCAATATCATGAGGGCGTGGCTGTTCCAGCATCTAACACACCCTTACCCTTCTGAAGAAC
AGAAAAAGCAGTTGGCACAAGATACAGGACTTACCATCCTTCAAGTGAACAATTGGTTTATTAATGCCCG
GAGAAGAATAGTGCAGCCCATGATAGACCAGTCCAACCGAGCAGTCAGCCAAGGGACACCTTATAACCCT
GATGGACAGCCAATGGGAGGTTTTGTAATGGACGGTCAGCAGCACATGGGCATCAGAGCGCCAGGGCTGC
AAAGTATGCCAGGGGAGTATGTAGCCCGGGGTGGCCCAATGGGTGTGAGTATGGGACAGCCGAGTTATAC
CCAAGCCCAGATGCCCCCCCATCCTGCTCAGCTGCGTCATGGGCCCCCCATGCATACGTACATTCCTGGA
CACCCTCACCACCCCGCAGTGATGATGCATGGAGGACAGCCCCACCCTGGAATGCCAATGTCAGCCTCAA
GCCCCTCGGTTCTTAACACAGGAGACCCGACAATGAGTGCACAAGTCATGGACATTCACGCTCAGTAG

Translation (465 aa):
MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMAPSMGSSVNDA
LKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPE
LDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDVTRSANLTDQ
PSWNRDHDDTASTRSGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFP
KVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNP
DGQPMGGFVMDGQQHMGIRAPGLQSMPGEYVARGGPMGVSMGQPSYTQAQMPPHPAQLRHGPPMHTYIPG
HPHHPAVMMHGGQPHPGMPMSASSPSVLNTGDPTMSAQVMDIHAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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