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Report for CCDS20178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20178.1 Public Mus musculus 6 Vmn1r15 23 108 98 CCDS HistoryNCBI Gene:113863Re-query CCDS DB by CCDS ID:20178.1Re-query CCDS DB by GeneID:113863See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20178.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000228297.1 ENSMUSP00000154252.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228297.1Link to Ensembl Protein Viewer:ENSMUSP00000154252.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228297Re-query CCDS DB by Protein ID:ENSMUSP00000154252
Original member Current member NCBI NM_053236.2 NP_444466.2 Accepted alive Link to Nucleotide Sequence:NM_053236.2Link to Protein Sequence:NP_444466.2Re-query CCDS DB by Nucleotide ID:NM_053236Re-query CCDS DB by Protein ID:NP_444466Link to BLAST:NP_444466.2

Chromosomal Locations for CCDS 20178.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57258149 57259048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGTCCTCGGTAGAGAATGTCCTTTATTTCCAAGCTGGGTTTGGAGTCCTACCCAATGTGTTTCTTCTTC
TTTTCTATATTTTCATAATCCTAGGTCACAGACCTAAACCCACAGACCTGATCTCCTGTCAACTGACTTT
GGTTCACATAATCATGTTCCTCACTGGAGGAAATATTTGGCTCGCAGACATATTTGGGTTTCTAAACATT
GAGAATGACATAAAATGTAAAGCAACTTTTTATACAAGTAGGGTAACGAGAGGCCTCTCTATCTGCATTA
CCTGCCTCCTGAGTGTTTTCCAGGCTGTCACAATCAGTCCCAGTACCTCTATGCTGGCAAAATTTAAACA
GAAACTTAAAAAGTACATGAACAATGCATTGTTCTATATTTGGTTTTTCAATTTGTCTGTTTGTAGTAAC
ATGCTTTTCTTTGTTGGTGGTTTTACCAATGTCAGTGAGACCAAGCAGGTGAAAGTCACTAAATCCTGCT
CACTCTTCCCCATGAACTACATCATCAGGGAATTAATTGTTATTCTGTCAACCTCCAGAGATGTGTTTCT
TGTAGCAGTCATGCTGACCACAAGTGCATATATGGTGAATATTTTGCACAGGCATCAGAGACAATACAAA
CATCTTCATAGCATCAAAAGCCTGAGAACATCCCCTGAGAAAAAGGCCACCCAGACCATCTTGCTGCTAG
TAGTTTTCTTTGTAGTCATGTACTGGGTGGATTTCATCATCTCATTCACCTCACTCCTGTTATGGATGTA
TGACCCAGTCGTCCTGACAGTTCAGAAGTTTCTGATATATGCTTATCCCACAATTACTCCTTTGGTACAA
ATTAGTTCTGATAAGAGAATAATAAATGTGCTGAAAAATTTGCAGTCAAAGTGCCACTAG

Translation (299 aa):
MSSVENVLYFQAGFGVLPNVFLLLFYIFIILGHRPKPTDLISCQLTLVHIIMFLTGGNIWLADIFGFLNI
ENDIKCKATFYTSRVTRGLSICITCLLSVFQAVTISPSTSMLAKFKQKLKKYMNNALFYIWFFNLSVCSN
MLFFVGGFTNVSETKQVKVTKSCSLFPMNYIIRELIVILSTSRDVFLVAVMLTTSAYMVNILHRHQRQYK
HLHSIKSLRTSPEKKATQTILLLVVFFVVMYWVDFIISFTSLLLWMYDPVVLTVQKFLIYAYPTITPLVQ
ISSDKRIINVLKNLQSKCH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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