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Report for CCDS48873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48873.1 Public Mus musculus 11 Bcas3 23 108 98 CCDS HistoryNCBI Gene:192197Re-query CCDS DB by CCDS ID:48873.1Re-query CCDS DB by GeneID:192197See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000092821.9 ENSMUSP00000090496.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092821.9Link to Ensembl Protein Viewer:ENSMUSP00000090496.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000092821Re-query CCDS DB by Protein ID:ENSMUSP00000090496
Original member Current member NCBI NM_001166642.1 NP_001160114.1 Accepted alive Link to Nucleotide Sequence:NM_001166642.1Link to Protein Sequence:NP_001160114.1Re-query CCDS DB by Nucleotide ID:NM_001166642Re-query CCDS DB by Protein ID:NP_001160114Link to BLAST:NP_001160114.1
Original member Current member NCBI NM_001166643.1 NP_001160115.1 Accepted alive Link to Nucleotide Sequence:NM_001166643.1Link to Protein Sequence:NP_001160115.1Re-query CCDS DB by Nucleotide ID:NM_001166643Re-query CCDS DB by Protein ID:NP_001160115Link to BLAST:NP_001160115.1

Chromosomal Locations for CCDS 48873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 85354893 85354975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85359625 85359679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85365552 85365627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85371057 85371163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85395339 85395420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85415652 85415724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85451661 85451768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85457868 85457944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85466159 85466235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85470752 85470835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85476638 85476808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85482643 85482736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85495828 85495961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85509428 85509692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85531793 85531943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85554190 85554314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85557323 85557488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85559071 85559171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85576782 85576882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85581042 85581238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85583897 85583994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85801785 85801952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 85825202 85825350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2742 nt):
ATGAATGAAACAATGGCTACAGATTCTCCTCGGAGACCCAGTCGTTGTACTGGCGGAGTCGTGGTCCGCC
CTCAGGCCGTCACGGAGCAGTCCTACATGGAGAGCGTCGTGACTTTTCTGCAGGATGTTGTGCCACAGGC
TTACAGTGGGTCTCCCCTAACAGAAGAAAAGGAGAAGATAGTCTGGGTCAGATTTGAGAATGCAGATCTG
AACGACACATCACGGAATCTAGAATTTCATGAACTGCATAGCACTGGAAATGAGCCTCCTCTGCTGGTTA
TGATCGGCTACAGTGACGGAATGCAGGTCTGGGGCATCCCTATCAGCGGGGAAGCCCAGGAGCTCTTCTC
TGTACGACATGGTCCAGTCCGAGCAGCTAGAATCTTGCCTGCTCCACAGTTGGGTGCCCAAAAGTGTGAT
AACTTTGCTGAGAAAAGACCTCTTCTTGGTGTTTGTAAGAGCATTGGATCTTCAGGCACGACACCACCGT
ACTGCTGTGTGGATCTGTATTCACTCCGGACTGGGGAAATGGTCAAGTCCATTCAGTTTAAAACACCCAT
TTATGATCTTCACTGTAACAAGCGGATCCTCGTCGTAGTCTTGCAGGAGAAAATTGCTGCCTTTGATAGC
TGTACTTTCACAAAAAAATTTTTTGTCACAAGTTGTTATCCTTGTCCTGGGCCAAACATGAATCCCATTG
CTCTTGGGAGCCGCTGGCTTGCTTATGCAGAAAATAAGCTGATTCGCTGTCACCAGTCCCGTGGAGGAGC
CTGTGGAGACAACATTCAGTCTTACACTGCCACTGTCCTTAGTGCTGCTAAAACACTGAAAAGTGGCCTG
ACGATGGTTGGGAAAGTGGTGACTCAACTGACAGGCACACTGCCCTCAGGGGTGACAGAAGATGACGTTG
CCCTACACTGCAACTCAAGACGGAGCCCCTTGGTTCCAGGCATCATCACAGTCATAGACACTGAGACGGT
TGGAGAGGGCCAGGTGCTTGTAAGTGAGGACTCGGACAGTGATGGCATTGTGGCCCACTTCCCTGCCCAT
GAGAAGCCAGTATGCTGTATGGCTTTTAATACTAGTGGAATGCTTTTAGTCACAACAGATACTCTTGGCC
ATGACTTTCATGTCTTCCAAATCCTGACTCATCCTTGGTCATCATCACAGTGTGCTGTCCATCATCTGTA
CACACTTCACAGGGGAGAGACCGAGGCCAAAGTTCAGGACATCTGTTTCAGCCATGATTGTCGTTGGGTG
GTGGTCAGTACCCTCCGGGGTACGTCCCACGTTTTCCCCATCAATCCTTATGGTGGCCAGCCTTGTGTCC
GCACACACATGTCACCACGAGTAGTCAATCGCATGAGCCGTTTCCAGAAAAGTGCTGGGCTGGAAGAGAT
TGAACAAGAGCTGACATCTAAGCAAGGCGGCCGCTGTAGTCCTGTTCCAGGCCTGTCCAGCAGCCCTTCT
GGCTCCCCGCTGCATGGGAAGCTGACCAGCCAAGACTCTTACAATAACTTTACAAACAACAACCCTGGCA
ATCCCCGGCTTTCTCCCCTCCCCAGCTTGATGGTAGTGACGCCTCTTGCGCAAATCAAACAGCCAATGAC
ACTGGGAACCATCACGAAGCGAACAGGCAAAGTTAAATCACCTCCACAAATTTCTCCAAGCAAATCAATG
GGCGGTGAGTTTTGCGTGGCTGCAGTGTTTGGGACTTCCAGGTCGTGGTTTGCAAACAACGCTGGTCTGA
AACGGGAAAAAGATCAGTCCAAACAAGTTGTAGTTGAATCTCTTTACATCATCAGCTGCTACGGGACCTT
AGTGGAGCACATGATTGAGCCCCGGCCGATCAGTACTGCTCCCAAGATAAGTGACGACACACCACTGGAG
ATAATGACGTCACCCCGTGCCAGCTGGACACTTGTTAGAACGCCTCAGTGGAATGAACTGCAGCCGCCAT
TCAATGCGAATCACCCTCTGCTCCTCGCTGCAGAAGCAGTGCAGTATTACCAGCTCCTGCTGGCCGGCTC
TCTTCCCCCTGGAAGTCCTGGCCCCATTACTCGACATGGGTCCTATGACAGCTTAGCCTCTGACCATAGT
GGACAGGAAGATGAAGAATGGCTTTCCCAGGTTGAAATTGTGACACACACCGGACCCCACAGGCGCCTGT
GGATGGGCCCACAATTCCATTTCAAAACCATCCAAACCTCAGGCCAGACCACGGTCATATCAACTAGTTC
TTCTGTGTTACAATCGCACGGACCTAGCGACACACCACAGCCGCTCTTGGACTTTGATACGGATGATCTA
GATCTTAACAGCCTCAGGATCCAGCCTGTCCGCTCTGACCCAGTCAGCATGCCAGGGTCATCCCGTGCTG
TCTCTGATCGGAGGGGAGTTTCCACAGTGACCGATGCTGCCTCAGGTACCTTTGACCGGAGCGTGACCCT
GCTGGAGGTGTGTGGGAGCTGGCCTGAGGGCTTCGGGCTGCGGCATATGTCCTCCATGGAGCACTCAGAG
GAGGGCCTCCGGGAACGGCTTGCAGATGCCATGGCCGAGTCACCAAGCCGAGACGTTGTGGGATCTGGAA
CAGAACTTCAGCGAGAGGGAAGCATCGAGACTCTGAGTAACAGCTCCGGCTCCACCAGCGGCAGCATCCC
AAGAAACTTCGATGGCTACCGATCTCCGCTCCCTACCAACGAGAGCCAGCCGCTCAGCCTCTTCCCCACT
GGCTTCCCCTAG

Translation (913 aa):
MNETMATDSPRRPSRCTGGVVVRPQAVTEQSYMESVVTFLQDVVPQAYSGSPLTEEKEKIVWVRFENADL
NDTSRNLEFHELHSTGNEPPLLVMIGYSDGMQVWGIPISGEAQELFSVRHGPVRAARILPAPQLGAQKCD
NFAEKRPLLGVCKSIGSSGTTPPYCCVDLYSLRTGEMVKSIQFKTPIYDLHCNKRILVVVLQEKIAAFDS
CTFTKKFFVTSCYPCPGPNMNPIALGSRWLAYAENKLIRCHQSRGGACGDNIQSYTATVLSAAKTLKSGL
TMVGKVVTQLTGTLPSGVTEDDVALHCNSRRSPLVPGIITVIDTETVGEGQVLVSEDSDSDGIVAHFPAH
EKPVCCMAFNTSGMLLVTTDTLGHDFHVFQILTHPWSSSQCAVHHLYTLHRGETEAKVQDICFSHDCRWV
VVSTLRGTSHVFPINPYGGQPCVRTHMSPRVVNRMSRFQKSAGLEEIEQELTSKQGGRCSPVPGLSSSPS
GSPLHGKLTSQDSYNNFTNNNPGNPRLSPLPSLMVVTPLAQIKQPMTLGTITKRTGKVKSPPQISPSKSM
GGEFCVAAVFGTSRSWFANNAGLKREKDQSKQVVVESLYIISCYGTLVEHMIEPRPISTAPKISDDTPLE
IMTSPRASWTLVRTPQWNELQPPFNANHPLLLAAEAVQYYQLLLAGSLPPGSPGPITRHGSYDSLASDHS
GQEDEEWLSQVEIVTHTGPHRRLWMGPQFHFKTIQTSGQTTVISTSSSVLQSHGPSDTPQPLLDFDTDDL
DLNSLRIQPVRSDPVSMPGSSRAVSDRRGVSTVTDAASGTFDRSVTLLEVCGSWPEGFGLRHMSSMEHSE
EGLRERLADAMAESPSRDVVGSGTELQREGSIETLSNSSGSTSGSIPRNFDGYRSPLPTNESQPLSLFPT
GFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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