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Report for CCDS17971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17971.1 Public Mus musculus 4 Gem 23 108 98 CCDS HistoryNCBI Gene:14579Re-query CCDS DB by CCDS ID:17971.1Re-query CCDS DB by GeneID:14579See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17971.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029868.6 ENSMUSP00000029868.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029868.6Link to Ensembl Protein Viewer:ENSMUSP00000029868.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029868Re-query CCDS DB by Protein ID:ENSMUSP00000029868
Original member Current member EBI ENSMUST00000108304.8 ENSMUSP00000103939.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108304.8Link to Ensembl Protein Viewer:ENSMUSP00000103939.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108304Re-query CCDS DB by Protein ID:ENSMUSP00000103939
Original member Current member NCBI NM_010276.4 NP_034406.2 Accepted alive Link to Nucleotide Sequence:NM_010276.4Link to Protein Sequence:NP_034406.2Re-query CCDS DB by Nucleotide ID:NM_010276Re-query CCDS DB by Protein ID:NP_034406Link to BLAST:NP_034406.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034406.2 295 P55041 295 100% 0 0

Chromosomal Locations for CCDS 17971.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 11705914 11706241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11711139 11711215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11711970 11712174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11713476 11713753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGACTCTGAATAATGTCACCATGCGCCAAGGCACTGTGGGCATGCAGCCACAGCAGCGCTGGAGTATCC
CTGCTGATGCCAGGCATCTGATGGTCCAGAAGGATCCCCACCCCTGCAACCTCCGAAACCGCCACTCTAC
TGCTCCGGAAGAGCACTGCCGGCGGAGCTGGTCGTCCGACTCCACAGACTCGGTCATCTCTTCTGAGTCT
GGAAACACCTACTACCGAGTAGTGCTTATAGGGGAGCAAGGAGTGGGCAAGTCCACCCTGGCCAACATCT
TTGCAGGTGTGCATGACAGCATGGACAGCGACTGTGAGGTCTTGGGAGAAGATACATATGAGCGTACCCT
GGTCGTTGACGGAGAGAGTGCAACCATTATCCTCCTGGACATGTGGGAAAATAAGGGGGAGAACGAATGG
CTCCATGACCACTGCATGCAGGTCGGGGATGCCTATCTGATCGTCTACTCTATCACAGACCGTGCAAGCT
TCGAGAAGGCATCTGAGCTGAGGATTCAGCTCCGCAGGGCCCGGCAGACAGAAGACATTCCTATAATTTT
GGTTGGCAACAAAAGCGACTTAGTGCGGTGTCGAGAAGTGTCTGTGTCAGAAGGGAGAGCTTGTGCTGTG
GTGTTCGACTGCAAATTCATCGAGACCTCTGCGGCTGTGCAGCACAACGTGAAGGAACTGTTTGAGGGCA
TTGTGCGACAGGTGCGCCTGCGCAGGGACAGCAAGGAGAAGAATGAGAGGAGGCTGGCCTACCAGAAGAG
GCGGGAGAGCATTCCCAGGAAAGCCAGGCGCTTCTGGGGCAAAATTGTGGCCAAAAACAACAAGAACATG
GCTTTCAAGCTCAAGTCAAAATCCTGCCATGACCTGTCTGTGCTCTAG

Translation (295 aa):
MTLNNVTMRQGTVGMQPQQRWSIPADARHLMVQKDPHPCNLRNRHSTAPEEHCRRSWSSDSTDSVISSES
GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLVVDGESATIILLDMWENKGENEW
LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV
VFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEKNERRLAYQKRRESIPRKARRFWGKIVAKNNKNM
AFKLKSKSCHDLSVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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