NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23347.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23347.1 Public Mus musculus 9 Scg3 23 108 98 CCDS HistoryNCBI Gene:20255Re-query CCDS DB by CCDS ID:23347.1Re-query CCDS DB by GeneID:20255See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23347.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034699.7 ENSMUSP00000034699.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034699.7Link to Ensembl Protein Viewer:ENSMUSP00000034699.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034699Re-query CCDS DB by Protein ID:ENSMUSP00000034699
Original member Current member NCBI NM_009130.3 NP_033156.1 Accepted alive Link to Nucleotide Sequence:NM_009130.3Link to Protein Sequence:NP_033156.1Re-query CCDS DB by Nucleotide ID:NM_009130Re-query CCDS DB by Protein ID:NP_033156Link to BLAST:NP_033156.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033156.1 471 P47867-1 471 100% 0 0

Chromosomal Locations for CCDS 23347.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 75643826 75643944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75651631 75651711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75661253 75661390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75663193 75663276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75665654 75665770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75669215 75669392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75675345 75675494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75676669 75676811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75681964 75682179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75682274 75682319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75682938 75682990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 75683635 75683725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGGGGTTCCTTTGGACCGGCTCTTGGATACTGGTGTTGGTGCTCAACAGCGGCCCAATTCAAGCTTTCC
CCAAACCCGAAGGCAGCCAAGACAAATCCCTGCATAATAGAGAATTAAGTGCAGAAAGACCTTTGAATGA
ACAGATCGCTGAGGCAGAGGCAGACAAGATTAAAAAGGCATTCCCTTCAGAAAGCAAGCCGAGTGAAAGC
AATTATTCTTCTGTCGATAACTTGAATCTGCTGAGGGCAATAACAGAAAAGGAAACCGTTGAGAAAGAGA
GACAATCCATAAGAAGCCCCCCGTTTGATAACCAACTGAACGTGGAAGACGCTGATTCAACCAAAAATCG
GAAACTGATCGATGAGTACGATTCCACCAAGAGTGGACTGGACCACAAGTTTCAAGATGACCCAGACGGC
CTTCATCAACTGGATGGAACTCCTTTAACTGCTGAAGACATCGTCCATAAGATTGCCACCAGGATTTATG
AGGAGAACGACAGAGGAGTGTTTGACAAAATTGTTTCTAAACTGCTGAATCTTGGCCTGATCACTGAAAG
CCAGGCACATACTCTGGAAGATGAAGTAGCAGAAGCTTTACAAAAACTGATTTCAAAAGAGGCCAACAAT
TATGAGGAGACCCTGGATAAACCCACAAGCAGGACCGAGAATCAGGATGGGAAAATACCAGAGAAAGTGA
CTCCGGTGGCAGCAGTCCAAGATGGCTTCACTAACCGTGAAAACGATGAGACGGTGTCTAACACCTTGAC
CTTGTCCAATGGCTTGGAAAGGAGAACTAACCCCCACAGGGAAGACGACTTTGAGGAACTCCAGTATTTC
CCCAACTTCTATGCACTACTGACAAGCATCGACTCAGAAAAAGAAGCAAAAGAGAAAGAAACCCTGATCA
CCATCATGAAGACATTGATTGACTTCGTGAAAATGATGGTGAAATACGGTACGATATCTCCAGAGGAAGG
CGTGTCCTACCTTGAAAACTTGGATGAAACAATTGCTCTGCAGACCAAGAACAAGCTAGAAAAAAATACT
ACTGATAGCAAAAGTAAGCTATTCCCAGCTCCACCAGAGAAGAGTCAGGAAGAAACAGACAGTACCAAGG
AAGAAGCCGCCAAGATGGAAAAGGAATACGGAAGCCTAAAAGACTCTACAAAAGATGATAACTCCAACCT
AGGAGGAAAGACAGATGAAGCCACAGGGAAGACAGAAGCCTACTTGGAAGCCATTAGAAAAAACATCGAA
TGGCTGAAGAAACATAACAAGAAGGGCAACAAAGAAGATTACGACCTTTCAAAGATGAGGGACTTTATCA
ACCAACAAGCTGACGCTTATGTGGAGAAGGGCATCCTCGACAAGGAAGAAGCCAACGCCATCAAACGCAT
CTACAGCAGCCTGTGA

Translation (471 aa):
MGFLWTGSWILVLVLNSGPIQAFPKPEGSQDKSLHNRELSAERPLNEQIAEAEADKIKKAFPSESKPSES
NYSSVDNLNLLRAITEKETVEKERQSIRSPPFDNQLNVEDADSTKNRKLIDEYDSTKSGLDHKFQDDPDG
LHQLDGTPLTAEDIVHKIATRIYEENDRGVFDKIVSKLLNLGLITESQAHTLEDEVAEALQKLISKEANN
YEETLDKPTSRTENQDGKIPEKVTPVAAVQDGFTNRENDETVSNTLTLSNGLERRTNPHREDDFEELQYF
PNFYALLTSIDSEKEAKEKETLITIMKTLIDFVKMMVKYGTISPEEGVSYLENLDETIALQTKNKLEKNT
TDSKSKLFPAPPEKSQEETDSTKEEAAKMEKEYGSLKDSTKDDNSNLGGKTDEATGKTEAYLEAIRKNIE
WLKKHNKKGNKEDYDLSKMRDFINQQADAYVEKGILDKEEANAIKRIYSSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH