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Report for CCDS21418.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21418.1 Public Mus musculus 7 Fah 23 108 98 CCDS HistoryNCBI Gene:14085Re-query CCDS DB by CCDS ID:21418.1Re-query CCDS DB by GeneID:14085See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21418.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032865.16 ENSMUSP00000032865.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032865.16Link to Ensembl Protein Viewer:ENSMUSP00000032865.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000032865Re-query CCDS DB by Protein ID:ENSMUSP00000032865
Original member Current member NCBI NM_010176.4 NP_034306.2 Accepted alive Link to Nucleotide Sequence:NM_010176.4Link to Protein Sequence:NP_034306.2Re-query CCDS DB by Nucleotide ID:NM_010176Re-query CCDS DB by Protein ID:NP_034306Link to BLAST:NP_034306.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034306.2 419 P35505 419 100% 0 0

Chromosomal Locations for CCDS 21418.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 84585265 84585344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84588831 84588948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84589574 84589675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84592382 84592428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84593186 84593261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84594713 84594843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84595458 84595557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84597034 84597086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84597178 84597275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84599054 84599144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84600777 84600826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84601033 84601154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84602081 84602191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 84605643 84605723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGTCCTTTATTCCAGTGGCCGAGGACTCCGACTTTCCCATCCAAAACCTGCCCTATGGTGTTTTCTCCA
CTCAAAGCAACCCAAAGCCACGGATTGGTGTAGCCATCGGTGACCAGATCTTGGACCTGAGTGTCATTAA
ACACCTCTTTACCGGACCTGCCCTTTCCAAACATCAACATGTCTTCGATGAGACAACTCTCAATAACTTC
ATGGGTCTGGGTCAAGCTGCATGGAAGGAGGCAAGAGCATCCTTACAGAACTTACTGTCTGCCAGCCAAG
CCCGGCTCAGAGATGACAAGGAGCTTCGGCAGCGTGCATTCACCTCCCAGGCTTCTGCGACAATGCACCT
TCCTGCTACCATAGGAGACTACACGGACTTCTACTCTTCTCGGCAGCATGCCACCAATGTTGGCATTATG
TTCAGAGGCAAGGAGAATGCGCTGTTGCCAAATTGGCTCCACTTACCTGTGGGATACCATGGCCGAGCTT
CCTCCATTGTGGTATCTGGAACCCCGATTCGAAGACCCATGGGGCAGATGAGACCTGATAACTCAAAGCC
TCCTGTGTATGGTGCCTGCAGACTCTTAGACATGGAGTTGGAAATGGCTTTCTTCGTAGGCCCTGGGAAC
AGATTCGGAGAGCCAATCCCCATTTCCAAAGCCCATGAACACATTTTCGGGATGGTCCTCATGAACGACT
GGAGCGCACGAGACATCCAGCAATGGGAGTACGTCCCACTTGGGCCATTCCTGGGGAAAAGCTTTGGAAC
CACAATCTCCCCGTGGGTGGTGCCTATGGATGCCCTCATGCCCTTTGTGGTGCCAAACCCAAAGCAGGAC
CCCAAGCCCTTGCCATATCTCTGCCACAGCCAGCCCTACACATTTGATATCAACCTGTCTGTCTCTTTGA
AAGGAGAAGGAATGAGCCAGGCGGCTACCATCTGCAGGTCTAACTTTAAGCACATGTACTGGACCATGCT
GCAGCAACTCACACACCACTCTGTTAATGGATGCAACCTGAGACCTGGGGACCTCTTGGCTTCTGGAACC
ATCAGTGGATCAGACCCTGAAAGCTTTGGCTCCATGCTGGAACTGTCCTGGAAGGGAACAAAGGCCATCG
ATGTGGAGCAGGGGCAGACCAGGACCTTCCTGCTGGACGGCGATGAAGTCATCATAACAGGTCACTGCCA
GGGGGACGGCTACCGTGTTGGCTTTGGCCAGTGTGCTGGGAAAGTGCTGCCTGCCCTTTCACCAGCCTGA

Translation (419 aa):
MSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPALSKHQHVFDETTLNNF
MGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPATIGDYTDFYSSRQHATNVGIM
FRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGN
RFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQD
PKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGT
ISGSDPESFGSMLELSWKGTKAIDVEQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPALSPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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