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Report for CCDS17747.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17747.1 Public Mus musculus 3 Gstm1 23 108 98 CCDS HistoryNCBI Gene:14862Re-query CCDS DB by CCDS ID:17747.1Re-query CCDS DB by GeneID:14862See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17747.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004140.10 ENSMUSP00000004140.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004140.10Link to Ensembl Protein Viewer:ENSMUSP00000004140.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000004140Re-query CCDS DB by Protein ID:ENSMUSP00000004140
Original member Current member NCBI NM_010358.5 NP_034488.1 Accepted alive Link to Nucleotide Sequence:NM_010358.5Link to Protein Sequence:NP_034488.1Re-query CCDS DB by Nucleotide ID:NM_010358Re-query CCDS DB by Protein ID:NP_034488Link to BLAST:NP_034488.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034488.1 218 P10649 218 100% 0 0

Chromosomal Locations for CCDS 17747.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108012689 108012778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108014753 108014863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108014945 108015040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108016328 108016428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108016519 108016600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108016884 108016948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108017351 108017426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108017740 108017775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (657 nt):
ATGCCTATGATACTGGGATACTGGAACGTCCGCGGACTGACACACCCGATCCGCATGCTCCTGGAATACA
CAGACTCAAGCTATGATGAGAAGAGATACACCATGGGTGACGCTCCCGACTTTGACAGAAGCCAGTGGCT
GAATGAGAAGTTCAAGCTGGGCCTGGACTTTCCCAATCTGCCTTACTTGATCGATGGATCACACAAGATC
ACCCAGAGCAATGCCATCCTGCGCTACCTTGCCCGAAAGCACCACCTGGATGGAGAGACAGAGGAGGAGA
GGATCCGTGCAGACATTGTGGAGAACCAGGTCATGGACACCCGCATGCAGCTCATCATGCTCTGTTACAA
CCCTGACTTTGAGAAGCAGAAGCCAGAGTTCTTGAAGACCATCCCTGAGAAAATGAAGCTCTACTCTGAG
TTCCTGGGCAAGAGGCCATGGTTTGCAGGGGACAAGGTCACCTATGTGGATTTCCTTGCTTATGACATTC
TTGACCAGTACCGTATGTTTGAGCCCAAGTGCCTGGACGCCTTCCCAAACCTGAGGGACTTCCTGGCCCG
CTTCGAGGGCCTCAAGAAGATCTCTGCCTACATGAAGAGTAGCCGCTACATCGCAACACCTATATTTTCA
AAGATGGCCCACTGGAGTAACAAGTAG

Translation (218 aa):
MPMILGYWNVRGLTHPIRMLLEYTDSSYDEKRYTMGDAPDFDRSQWLNEKFKLGLDFPNLPYLIDGSHKI
TQSNAILRYLARKHHLDGETEEERIRADIVENQVMDTRMQLIMLCYNPDFEKQKPEFLKTIPEKMKLYSE
FLGKRPWFAGDKVTYVDFLAYDILDQYRMFEPKCLDAFPNLRDFLARFEGLKKISAYMKSSRYIATPIFS
KMAHWSNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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