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Report for CCDS35624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35624.1 Public Mus musculus 1 Dnajb2 23 108 98 CCDS HistoryNCBI Gene:56812Re-query CCDS DB by CCDS ID:35624.1Re-query CCDS DB by GeneID:56812See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35624.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082158.12 ENSMUSP00000080796.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082158.12Link to Ensembl Protein Viewer:ENSMUSP00000080796.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000082158Re-query CCDS DB by Protein ID:ENSMUSP00000080796
Original member Current member EBI ENSMUST00000188346.6 ENSMUSP00000140588.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188346.6Link to Ensembl Protein Viewer:ENSMUSP00000140588.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188346Re-query CCDS DB by Protein ID:ENSMUSP00000140588
Original member Current member EBI ENSMUST00000188290.6 ENSMUSP00000140634.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000188290.6Link to Ensembl Protein Viewer:ENSMUSP00000140634.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000188290Re-query CCDS DB by Protein ID:ENSMUSP00000140634
Original member Current member NCBI NM_001159884.1 NP_001153356.1 Accepted alive Link to Nucleotide Sequence:NM_001159884.1Link to Protein Sequence:NP_001153356.1Re-query CCDS DB by Nucleotide ID:NM_001159884Re-query CCDS DB by Protein ID:NP_001153356Link to BLAST:NP_001153356.1
Original member Current member NCBI NM_001159885.1 NP_001153357.1 Accepted alive Link to Nucleotide Sequence:NM_001159885.1Link to Protein Sequence:NP_001153357.1Re-query CCDS DB by Nucleotide ID:NM_001159885Re-query CCDS DB by Protein ID:NP_001153357Link to BLAST:NP_001153357.1
Original member Current member NCBI NM_178055.4 NP_835156.1 Accepted alive Link to Nucleotide Sequence:NM_178055.4Link to Protein Sequence:NP_835156.1Re-query CCDS DB by Nucleotide ID:NM_178055Re-query CCDS DB by Protein ID:NP_835156Link to BLAST:NP_835156.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153356.1 277 Q9QYI5-1 277 100% 0 0
NP_001153357.1 277 Q9QYI5-1 277 100% 0 0
NP_835156.1 277 Q9QYI5-1 277 100% 0 0

Chromosomal Locations for CCDS 35624.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75236884 75236948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75237455 75237564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75239280 75239333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75239508 75239630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75240892 75240984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75241171 75241273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75241409 75241479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75243458 75243661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75244794 75244804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGGCATCCTACTACGAGATTCTAGACGTACCGCGGAGTGCGTCCCCTGATGACATCAAGAAGGCGTACC
GAAAGAAGGCTCTGCAGTGGCACCCAGACAAGAACCCGGATAATAAAGAATTTGCTGAAAAAAAATTTAA
GGAGGTGGCAGAGGCCTATGAAGTACTATCTGACAAGCACAAACGGGAGATCTATGACCGCTATGGCCGG
GAAGGGCTGACCGGGGCAGGAAGTGGTCCTTCTCGATCGGAAACTGGTGGTGCGGGGCCTGGCTTCACAT
TCACCTTCCGTAGCCCCGAGGAAGTCTTCCGGGAGTTCTTCGGGAGCGGAGACCCTTTTTCAGAGCTCTT
TGATGACTTGGGTGTCTTCTCGGAGCTTCAGAACCAGGGTCCCCGACTCACGGGCCCTTTCTTCACTTTC
TCTTCTTCCTTTCCTGCCAACTCCGATTTCTCCTCCTCATCTTTCTCCTTCAGCCCGGGGGCTGGTGCTT
TCCGCTCCGTTTCTACGTCCACCACCTTTGTCCAAGGCCGCCGCATCACCACACGCAGAATCATGGAGAA
CGGGCAGGAGCGGGTAGAAGTGGAAGAGGATGGACAACTGAAGTCAGTGTCAATCAATGGTGTCCCAGAT
GACCTGGCACTAGGCTTGGAGCTGAGCCGTCGTGAGCAGCAACCTTCAGTTGCCCCTGGGCTGGGGGTCA
TGCAGGTCCGGCCGACCTCTCTCTCTCGTCCCCCTGACCATGATCTTTCTGAGGATGAGGACCTGCAGCT
CGCCATGGCTTACAGCCTGTCAGAGATGGAGGCGGCTGGGCAGAAGCCAGCAGATGTGTTCTGA

Translation (277 aa):
MASYYEILDVPRSASPDDIKKAYRKKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGR
EGLTGAGSGPSRSETGGAGPGFTFTFRSPEEVFREFFGSGDPFSELFDDLGVFSELQNQGPRLTGPFFTF
SSSFPANSDFSSSSFSFSPGAGAFRSVSTSTTFVQGRRITTRRIMENGQERVEVEEDGQLKSVSINGVPD
DLALGLELSRREQQPSVAPGLGVMQVRPTSLSRPPDHDLSEDEDLQLAMAYSLSEMEAAGQKPADVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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