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Report for CCDS78638.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78638.1 Public Mus musculus 1 Ccl20 23 108 98 CCDS HistoryNCBI Gene:20297Re-query CCDS DB by CCDS ID:78638.1Re-query CCDS DB by GeneID:20297See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78638.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000186832.1 ENSMUSP00000139923.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186832.1Link to Ensembl Protein Viewer:ENSMUSP00000139923.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186832Re-query CCDS DB by Protein ID:ENSMUSP00000139923
Original member Current member NCBI NM_001159738.1 NP_001153210.1 Accepted alive Link to Nucleotide Sequence:NM_001159738.1Link to Protein Sequence:NP_001153210.1Re-query CCDS DB by Nucleotide ID:NM_001159738Re-query CCDS DB by Protein ID:NP_001153210Link to BLAST:NP_001153210.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153210.1 96 O89093-2 96 100% 0 0

Chromosomal Locations for CCDS 78638.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 83116824 83116902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83117799 83117910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83117999 83118076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 83118696 83118717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (291 nt):
ATGGCCTGCGGTGGCAAGCGTCTGCTCTTCCTTGCTTTGGCATGGGTACTGCTGGCTCACCTCTGCAGCC
AGGCAGAAGCAAGCAACTACGACTGTTGCCTCTCGTACATACAGACGCCTCTTCCTTCCAGAGCTATTGT
GGGTTTCACAAGACAGATGGCCGATGAAGCTTGTGACATTAATGCTATCATCTTTCACACGAAGAAAAGA
AAATCTGTGTGCGCTGATCCAAAGCAGAACTGGGTGAAAAGGGCTGTGAACCTCCTCAGCCTAAGAGTCA
AGAAGATGTAA

Translation (96 aa):
MACGGKRLLFLALAWVLLAHLCSQAEASNYDCCLSYIQTPLPSRAIVGFTRQMADEACDINAIIFHTKKR
KSVCADPKQNWVKRAVNLLSLRVKKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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