NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50380.1 Public Mus musculus 19 Slc22a27 23 108 98 CCDS HistoryNCBI Gene:171405Re-query CCDS DB by CCDS ID:50380.1Re-query CCDS DB by GeneID:171405See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 50380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075619.4 ENSMUSP00000093991.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075619.4Link to Ensembl Protein Viewer:ENSMUSP00000093991.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000075619Re-query CCDS DB by Protein ID:ENSMUSP00000093991
Original member Current member NCBI NM_134256.1 NP_599017.1 Accepted alive Link to Nucleotide Sequence:NM_134256.1Link to Protein Sequence:NP_599017.1Re-query CCDS DB by Nucleotide ID:NM_134256Re-query CCDS DB by Protein ID:NP_599017Link to BLAST:NP_599017.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_599017.1 551 Q76M72-1 551 100% 0 0

Chromosomal Locations for CCDS 50380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7864777 7864837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7865742 7865945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7866883 7866991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7879390 7879604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7880164 7880279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7896758 7896878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7909693 7909861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7909951 7910105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7925858 7925961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7926369 7926770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGTCCTTTCAAGAACTCCTGAATCAAGTTGGAAGCCTAGGAAGATTCCAGATCCTTCAGATAGTTTTTC
TTTTACTCCTCAATGCCATTGTGGTACCTCATATTGCAATGGAGAACTTTACTGCAGCCATTCCCAATCA
TCGCTGCTGGGTCCCCATCCTTGACAATGACACTGCCTCTGATAATGGCAGTAGGATCCTGAGCCAAGAT
GACCTCCTGAGGATCTCCATCCCCCTGGATTCCAACCTGAGGCCAGAGAAGTGTCGTCGTTTTGCCCAAC
CACAGTGGCATCTTCTTCATTTGAATGGCACTTTCTCCAATGTGTCAGAGCCAGACACTGAGCCCTGTGT
GGATGGTTGGGTGTATGACAGGAGCAACTTCCTTTCTACCATTGTGACTGAGTGGGACTTGGTATGTGAA
TCCCAGGCACTGAATTCTGTCACTAAATTTTCATTCATGATTGGCCTATTTATAGGGGGTATCATATGTG
GCCATCTGTCAGACAGGCTTGGGAGGAAGTTCATTTTAACATGTGCTTTATTACAATTTGCCATCACTGA
AACCTGTGTAGCTTTTGCCCCCTCCTTCTTCATCTACTGCTCACTTCGATTCCTGGCAGGATTGTCTGTG
GAACCCATATTAGTAAATAGTCACTTGCTCATGTTAGAATGGACAAGCCCTAAATTTCTAACCATGATGG
CAGCGCTTTTATCTTGTGCTCCTAATATTGGATACATGATATCAGCAGGCCTGGCTTTTCTATTTAGAAT
CTGGCATCACCTCCAGCTGACAATGTCTGTGCCAATATTCTTCTTCCTTATACTCACAAGGTGGCTGTCA
GAGTCAGCTCGGTGGCTGATTGTGACCAACAAACCCCAGAAGGGCTTAAAGGAACTTAGAAAAGTTGCAC
ACATGAATGGAATGAAGAATTCTGGAGACCTAACCATGGAGATTGTGAGAACAAGTATGAAGGCAGAACT
TGAGGCAGCAAAGACTAAACCTTCTCTAAGAGATTTGTTCCATACATCTATCCTACGTAAGCGGATATGT
GTCCTGTCCTTTATGAGACTTTTTTTTACAGTATCAATTTTTGGCCTGGCAGTTCACCTCCAACACCTGA
GTTCTAATATTATCCTGTTGCAGTTTCTCATTAGTGCATTGGCCATACTAGTCAGTGTTATTGGACCTTT
TGTACTTAATCACATTGGCCGTAGAATAACCTATCTGGTTCTCATGTCTCTGAGGGGAATCTTCATTCTG
ATTGCTGTATTTGTACCTCAAGAAATGCAGACCCTGCGTATTATTATGGCCACATTGGCAGAAGGAATTT
CTTCTCTGTGTGTGGGTGTTAGTCGTCTTCATACAAATGAGCTACTCCCAACCACACTAAGGGCAACAGC
TGTAGGAGTCATTGGGTTCTTTGGTAATAGTGGATCATTCCTATCCCCCCTGTTTATGCTGCTAGCGACA
TACTATGCCAACATGCCCTGGATCTTCTATGGAGGCTTCTCCATCTTCAACGCGTTTACTGTGTTTCTCC
TTCCTGAAACCAAGAATCAGCCTCTTCCTGACTCCACCCATGATGTAGGAAATGATTGGAAAGAATCAAG
AAAAGGAAAGAAGGAGGATCCCATCATTAAAGTCACGAGGTTTTAA

Translation (551 aa):
MSFQELLNQVGSLGRFQILQIVFLLLLNAIVVPHIAMENFTAAIPNHRCWVPILDNDTASDNGSRILSQD
DLLRISIPLDSNLRPEKCRRFAQPQWHLLHLNGTFSNVSEPDTEPCVDGWVYDRSNFLSTIVTEWDLVCE
SQALNSVTKFSFMIGLFIGGIICGHLSDRLGRKFILTCALLQFAITETCVAFAPSFFIYCSLRFLAGLSV
EPILVNSHLLMLEWTSPKFLTMMAALLSCAPNIGYMISAGLAFLFRIWHHLQLTMSVPIFFFLILTRWLS
ESARWLIVTNKPQKGLKELRKVAHMNGMKNSGDLTMEIVRTSMKAELEAAKTKPSLRDLFHTSILRKRIC
VLSFMRLFFTVSIFGLAVHLQHLSSNIILLQFLISALAILVSVIGPFVLNHIGRRITYLVLMSLRGIFIL
IAVFVPQEMQTLRIIMATLAEGISSLCVGVSRLHTNELLPTTLRATAVGVIGFFGNSGSFLSPLFMLLAT
YYANMPWIFYGGFSIFNAFTVFLLPETKNQPLPDSTHDVGNDWKESRKGKKEDPIIKVTRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH