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Report for CCDS44615.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44615.1 Public Homo sapiens 11 MS4A6A 24 110 108 CCDS HistoryNCBI Gene:64231Re-query CCDS DB by CCDS ID:44615.1Re-query CCDS DB by GeneID:64231See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44615.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000528851.6 ENSP00000431901.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000528851.6Link to Ensembl Protein Viewer:ENSP00000431901.1Re-query CCDS DB by Nucleotide ID:ENST00000528851Re-query CCDS DB by Protein ID:ENSP00000431901
Original member Current member NCBI NM_022349.4 NP_071744.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022349.4Link to Protein Sequence:NP_071744.2Re-query CCDS DB by Nucleotide ID:NM_022349Re-query CCDS DB by Protein ID:NP_071744Link to BLAST:NP_071744.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071744.2 225 Q9H2W1-2 225 100% 0 0

Chromosomal Locations for CCDS 44615.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 60173001 60173129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60175402 60175611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60178260 60178316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60179831 60179965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 60181581 60181727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGACATCACAACCTGTTCCCAATGAGACCATCATAGTGCTCCCATCAAATGTCATCAACTTCTCCCAAG
CAGAGAAACCCGAACCCACCAACCAGGGGCAGGATAGCCTGAAGAAACATCTACACGCAGAAATCAAAGT
TATTGGGACTATCCAGATCTTGTGTGGCATGATGGTATTGAGCTTGGGGATCATTTTGGCATCTGCTTCC
TTCTCTCCAAATTTTACCCAAGTGACTTCTACACTGTTGAACTCTGCTTACCCATTCATAGGACCCTTTT
TTTTTATCATCTCTGGCTCTCTATCAATCGCCACAGAGAAAAGGTTAACCAAGCTTTTGGTGCATAGCAG
CCTGGTTGGAAGCATTCTGAGTGCTCTGTCTGCCCTGGTGGGTTTCATTATCCTGTCTGTCAAACAGGCC
ACCTTAAATCCTGCCTCACTGCAGTGTGAGTTGGACAAAAATAATATACCAACAAGAAGTTATGTTTCTT
ACTTTTATCATGATTCACTTTATACCACGGACTGCTATACAGCCAAAGCCAGTCTGGCTGGAACTCTCTC
TCTGATGCTGATTTGCACTCTGCTGGAATTCTGCCTAGCTGTGCTCACTGCTGTGCTGCGGTGGAAACAG
GCTTACTCTGACTTCCCTGGGGTGAGTGTGCTGGCCGGCTTCACTTAA

Translation (225 aa):
MTSQPVPNETIIVLPSNVINFSQAEKPEPTNQGQDSLKKHLHAEIKVIGTIQILCGMMVLSLGIILASAS
FSPNFTQVTSTLLNSAYPFIGPFFFIISGSLSIATEKRLTKLLVHSSLVGSILSALSALVGFIILSVKQA
TLNPASLQCELDKNNIPTRSYVSYFYHDSLYTTDCYTAKASLAGTLSLMLICTLLEFCLAVLTAVLRWKQ
AYSDFPGVSVLAGFT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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