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Report for CCDS31542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31542.1 Public Homo sapiens 11 OR9I1 24 110 108 CCDS HistoryNCBI Gene:219954Re-query CCDS DB by CCDS ID:31542.1Re-query CCDS DB by GeneID:219954See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 31542.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000641478.1 ENSP00000493104.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641478.1Link to Ensembl Protein Viewer:ENSP00000493104.1Re-query CCDS DB by Nucleotide ID:ENST00000641478Re-query CCDS DB by Protein ID:ENSP00000493104
Original member Current member EBI ENST00000641439.1 ENSP00000493370.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000641439.1Link to Ensembl Protein Viewer:ENSP00000493370.1Re-query CCDS DB by Nucleotide ID:ENST00000641439Re-query CCDS DB by Protein ID:ENSP00000493370
Original member Current member NCBI NM_001005211.2 NP_001005211.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001005211.2Link to Protein Sequence:NP_001005211.1Re-query CCDS DB by Nucleotide ID:NM_001005211Re-query CCDS DB by Protein ID:NP_001005211Link to BLAST:NP_001005211.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001005211.1 314 Q8NGQ6 314 100% 0 0

Chromosomal Locations for CCDS 31542.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 58118500 58119444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGCCAAGAATAATCTCACCAGAGTAACCGAATTCATTCTCATGGGCTTTATGGACCACCCCAAATTGG
AGATTCCCCTCTTTCTGGTGTTTCTGAGTTTCTACCTAGTCACCCTTCTTGGGAATGTGGGGATGATTAT
GTTAATCCAAGTAGATGTCAAACTCTACACCCCAATGTACTTCTTCCTGAGCCACCTCTCCCTGCTGGAT
GCCTGTTACACCTCAGTCATCACCCCTCAGATCCTAGCCACATTGGCCACAGGCAAAACGGTCATCTCCT
ACGGCCACTGTGCTGCCCAGTTCTTTTTATTCACCATCTGTGCAGGCACAGAGTGCTTTCTGCTGGCAGT
GATGGCCTATGATCGCTATGCTGCCATTCGCAACCCACTGCTCTATACCGTGGCCATGAATCCCAGGCTC
TGCTGGAGCCTGGTGGTAGGAGCCTATGTCTGTGGGGTGTCAGGAGCCATCCTGCGTACCACTTGCACCT
TCACCCTCTCCTTCTGTAAGGACAATCAAATAAACTTCTTCTTCTGTGACCTCCCACCCCTGCTGAAGCT
TGCCTGCAGTGACACAGCAAACATCGAGATTGTCATCATCTTCTTTGGCAATTTTGTGATTTTGGCCAAT
GCCTCCGTCATCCTGATTTCCTATCTGCTCATCATCAAGACCATTTTGAAAGTGAAGTCTTCAGGTGGCA
GGGCCAAGACTTTCTCCACATGTGCCTCTCACATCACTGCTGTGGCCCTTTTCTTTGGAGCCCTTATCTT
CATGTATCTGCAAAGTGGCTCAGGCAAATCTCTGGAGGAAGACAAAGTCGTGTCTGTCTTCTATACAGTG
GTCATCCCCATGCTGAACCCTCTGATCTACAGCTTAAGAAACAAAGATGTAAAAGACGCCTTCAGAAAGG
TCGCTAGGAGACTCCAGGTGTCCCTGAGCATGTAG

Translation (314 aa):
MAKNNLTRVTEFILMGFMDHPKLEIPLFLVFLSFYLVTLLGNVGMIMLIQVDVKLYTPMYFFLSHLSLLD
ACYTSVITPQILATLATGKTVISYGHCAAQFFLFTICAGTECFLLAVMAYDRYAAIRNPLLYTVAMNPRL
CWSLVVGAYVCGVSGAILRTTCTFTLSFCKDNQINFFFCDLPPLLKLACSDTANIEIVIIFFGNFVILAN
ASVILISYLLIIKTILKVKSSGGRAKTFSTCASHITAVALFFGALIFMYLQSGSGKSLEEDKVVSVFYTV
VIPMLNPLIYSLRNKDVKDAFRKVARRLQVSLSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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