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Report for CCDS3485.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3485.1 Public Homo sapiens 4 OCIAD2 24 110 108 CCDS HistoryNCBI Gene:132299Re-query CCDS DB by CCDS ID:3485.1Re-query CCDS DB by GeneID:132299See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3485.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273860.8 ENSP00000273860.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000273860.8Link to Ensembl Protein Viewer:ENSP00000273860.4Re-query CCDS DB by Nucleotide ID:ENST00000273860Re-query CCDS DB by Protein ID:ENSP00000273860
Original member Current member EBI ENST00000620187.4 ENSP00000483997.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620187.4Link to Ensembl Protein Viewer:ENSP00000483997.1Re-query CCDS DB by Nucleotide ID:ENST00000620187Re-query CCDS DB by Protein ID:ENSP00000483997
Original member Current member NCBI NM_001286773.2 NP_001273702.1 Accepted alive Link to Nucleotide Sequence:NM_001286773.2Link to Protein Sequence:NP_001273702.1Re-query CCDS DB by Nucleotide ID:NM_001286773Re-query CCDS DB by Protein ID:NP_001273702Link to BLAST:NP_001273702.1
Original member Current member NCBI NM_152398.4 NP_689611.1 Accepted alive Link to Nucleotide Sequence:NM_152398.4Link to Protein Sequence:NP_689611.1Re-query CCDS DB by Nucleotide ID:NM_152398Re-query CCDS DB by Protein ID:NP_689611Link to BLAST:NP_689611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273702.1 99 Q56VL3-2 99 100% 0 0
NP_689611.1 99 Q56VL3-2 99 100% 0 0

Chromosomal Locations for CCDS 3485.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 48885531 48885565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48894006 48894053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48897804 48897857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48899829 48899925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 48904484 48904549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (300 nt):
ATGGCTTCAGCGTCTGCTCGTGGAAACCAAGATAAAGATGCCCATTTTCCACCACCAAGCAAGCAGAGCC
TGTTGTTTTGTCCAAAATCAAAACTGCACATCCACAGAGCAGAGATCTCAAAGATTATGCGAGAATGTCA
GGAAGAAAGTTTCTGGAAGAGAGCTCTGCCTTTTTCTCTTGTAAGCATGCTTGTCACCCAGGGACTAGTC
TACCAAGGTTATTTGGCAGCTAATTCTAGATTTGGATCATTGCCCAAAGTTGCACGCACTGCCTCCTTAC
CTGTGAGGAATGCAAAATAA

Translation (99 aa):
MASASARGNQDKDAHFPPPSKQSLLFCPKSKLHIHRAEISKIMRECQEESFWKRALPFSLVSMLVTQGLV
YQGYLAANSRFGSLPKVARTASLPVRNAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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