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Report for CCDS1408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1408.1 Public Homo sapiens 1 TMEM9 24 110 108 CCDS HistoryNCBI Gene:252839Re-query CCDS DB by CCDS ID:1408.1Re-query CCDS DB by GeneID:252839See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1408.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367330.6 ENSP00000356299.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367330.6Link to Ensembl Protein Viewer:ENSP00000356299.1Re-query CCDS DB by Nucleotide ID:ENST00000367330Re-query CCDS DB by Protein ID:ENSP00000356299
Original member Current member EBI ENST00000367333.6 ENSP00000356302.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367333.6Link to Ensembl Protein Viewer:ENSP00000356302.2Re-query CCDS DB by Nucleotide ID:ENST00000367333Re-query CCDS DB by Protein ID:ENSP00000356302
Original member Current member EBI ENST00000367334.9 ENSP00000356303.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367334.9Link to Ensembl Protein Viewer:ENSP00000356303.5Re-query CCDS DB by Nucleotide ID:ENST00000367334Re-query CCDS DB by Protein ID:ENSP00000356303
Original member Current member EBI ENST00000485839.6 ENSP00000476893.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000485839.6Link to Ensembl Protein Viewer:ENSP00000476893.1Re-query CCDS DB by Nucleotide ID:ENST00000485839Re-query CCDS DB by Protein ID:ENSP00000476893
Original member Current member NCBI NM_001288564.2 NP_001275493.1 Accepted alive Link to Nucleotide Sequence:NM_001288564.2Link to Protein Sequence:NP_001275493.1Re-query CCDS DB by Nucleotide ID:NM_001288564Re-query CCDS DB by Protein ID:NP_001275493Link to BLAST:NP_001275493.1
Original member Current member NCBI NM_001288565.2 NP_001275494.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001288565.2Link to Protein Sequence:NP_001275494.1Re-query CCDS DB by Nucleotide ID:NM_001288565Re-query CCDS DB by Protein ID:NP_001275494Link to BLAST:NP_001275494.1
Original member Current member NCBI NM_001288566.2 NP_001275495.1 Accepted alive Link to Nucleotide Sequence:NM_001288566.2Link to Protein Sequence:NP_001275495.1Re-query CCDS DB by Nucleotide ID:NM_001288566Re-query CCDS DB by Protein ID:NP_001275495Link to BLAST:NP_001275495.1
Original member Current member NCBI NM_001288567.2 NP_001275496.1 Accepted alive Link to Nucleotide Sequence:NM_001288567.2Link to Protein Sequence:NP_001275496.1Re-query CCDS DB by Nucleotide ID:NM_001288567Re-query CCDS DB by Protein ID:NP_001275496Link to BLAST:NP_001275496.1
Original member Current member NCBI NM_001288568.2 NP_001275497.1 Accepted alive Link to Nucleotide Sequence:NM_001288568.2Link to Protein Sequence:NP_001275497.1Re-query CCDS DB by Nucleotide ID:NM_001288568Re-query CCDS DB by Protein ID:NP_001275497Link to BLAST:NP_001275497.1
Original member Current member NCBI NM_001288569.2 NP_001275498.1 Accepted alive Link to Nucleotide Sequence:NM_001288569.2Link to Protein Sequence:NP_001275498.1Re-query CCDS DB by Nucleotide ID:NM_001288569Re-query CCDS DB by Protein ID:NP_001275498Link to BLAST:NP_001275498.1
Original member Current member NCBI NM_016456.5 NP_057540.1 Accepted alive Link to Nucleotide Sequence:NM_016456.5Link to Protein Sequence:NP_057540.1Re-query CCDS DB by Nucleotide ID:NM_016456Re-query CCDS DB by Protein ID:NP_057540Link to BLAST:NP_057540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001275493.1 183 Q9P0T7 183 100% 0 0
NP_001275494.1 183 Q9P0T7 183 100% 0 0
NP_001275495.1 183 Q9P0T7 183 100% 0 0
NP_001275496.1 183 Q9P0T7 183 100% 0 0
NP_001275497.1 183 Q9P0T7 183 100% 0 0
NP_001275498.1 183 Q9P0T7 183 100% 0 0
NP_057540.1 183 Q9P0T7 183 100% 0 0

Chromosomal Locations for CCDS 1408.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 201135663 201135815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201143820 201143951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201146740 201146848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201151761 201151852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201153858 201153923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (552 nt):
ATGAAGCTCTTATCTTTGGTGGCTGTGGTCGGGTGTTTGCTGGTGCCCCCAGCTGAAGCCAACAAGAGTT
CTGAAGATATCCGGTGCAAATGCATCTGTCCACCTTATAGAAACATCAGTGGGCACATTTACAACCAGAA
TGTATCCCAGAAGGACTGCAACTGCCTGCACGTGGTGGAGCCCATGCCAGTGCCTGGCCATGACGTGGAG
GCCTACTGCCTGCTGTGCGAGTGCAGGTACGAGGAGCGCAGCACCACCACCATCAAGGTCATCATTGTCA
TCTACCTGTCCGTGGTGGGTGCCCTGTTGCTCTACATGGCCTTCCTGATGCTGGTGGACCCTCTGATCCG
AAAGCCGGATGCATATACTGAGCAACTGCACAATGAGGAGGAGAATGAGGATGCTCGCTCTATGGCAGCA
GCTGCTGCATCCCTCGGGGGACCCCGAGCAAACACAGTCCTGGAGCGTGTGGAAGGTGCCCAGCAGCGGT
GGAAGCTGCAGGTGCAGGAGCAGCGGAAGACAGTCTTCGATCGGCACAAGATGCTCAGCTAG

Translation (183 aa):
MKLLSLVAVVGCLLVPPAEANKSSEDIRCKCICPPYRNISGHIYNQNVSQKDCNCLHVVEPMPVPGHDVE
AYCLLCECRYEERSTTTIKVIIVIYLSVVGALLLYMAFLMLVDPLIRKPDAYTEQLHNEEENEDARSMAA
AAASLGGPRANTVLERVEGAQQRWKLQVQEQRKTVFDRHKMLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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