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Report for CCDS29631.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29631.1 Public Mus musculus 19 Dtx4 23 108 98 CCDS HistoryNCBI Gene:207521Re-query CCDS DB by CCDS ID:29631.1Re-query CCDS DB by GeneID:207521See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29631.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045521.8 ENSMUSP00000040229.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045521.8Link to Ensembl Protein Viewer:ENSMUSP00000040229.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000045521Re-query CCDS DB by Protein ID:ENSMUSP00000040229
Original member Current member NCBI NM_172442.3 NP_766030.3 Accepted alive Link to Nucleotide Sequence:NM_172442.3Link to Protein Sequence:NP_766030.3Re-query CCDS DB by Nucleotide ID:NM_172442Re-query CCDS DB by Protein ID:NP_766030Link to BLAST:NP_766030.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766030.3 616 Q6PDK8 616 100% 0 0

Chromosomal Locations for CCDS 29631.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 12469476 12469709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12473230 12473319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12478126 12478287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12482074 12482226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12483046 12483107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12485264 12485425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12486429 12486490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12491836 12492550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 12501007 12501217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1851 nt):
ATGCTCCTGGCCTCGGCAGTGGTGGTGTGGGAATGGCTGAACGAACACGGCCGCTGGCGTCCCTACAGCC
CAGCCGTGAGTCACCACATCGAGGCGGTGGTGCGCGCTGGTCCCCGCGCCGGGGGCAGCGTGGTGTTGGG
CCAGGTGGACAGCCGGCTCGCGCCCTACATCATCGACCTGCAGTCCATGAACCAGTTCCGCCAAGACACG
GGGACCCTCCGCCCAGTTCGACGAAACTACTATGACCCATCCTCAGCCCCTGGTAAGGGAGTCGTGTGGG
AATGGGAGAATGACAATGGTTCCTGGACTCCCTATGACATGGAAGTCGGCATCACCATCCAGTATGCCTA
TGAGAAGCAGCACCCATGGATCGACCTCACCTCCATTGGCTTCAGCTACATAATAGACTTCAGCACCATG
GGCCAGATCAACAGGCAGACCCAACGCCAGCGCCGTGTCAGACGACGACTAGACCTCATCTACCCCATGG
TCACGGGCACTATGCCAAAGACTCAGTCCTGGCCAGTCAGTCCTGGACCGGCGACGTCCTCCCCTGCACC
ACCTTGCTCCTGTCCACAGTGTGTTTTGGTGATGAGCGTCAAGGCTGCTGTGGTCCATGGGGGCACTGGG
CCTCCAGCAGTACGAAAGAACATGGCCCTCTCTGGAGTGGGCAAGCTGCCCCAGCCACCTGGCCCTGGAG
CAAAGCCACTAGACACCACTGGCACCATTCGAGGCCCAGGGAAGACAGCCCCATCGCAGGTTATCAGAAG
ACAAGTCTCTAATGCACCAGCTGGGGCGACTGTAGGCTCCCCTGCCAGCCCACAAGGAAGCAACAGGAAG
ACTGGAAGGGTGGCACTGGCCACTTTGAATCGGTCCAATCTGCAGCGACTGGCCATTGCCCAGTCCCGGG
TGCTGATTGCCTCCGGGGTTCCCACTGTGCCTGTGAAAAACTTGAATGGGTCCAGCCCTGTTAATCCTGC
CTTGGCAGGAATCACCGGGATACTCATGAGTGCAGCGGGATTGCCTGTGTGCCTCACTCGCCCACCAAAG
CTGGTCCTCCACCCGCCCCCTGTCAGCAAGAGTGAGATAAAGTCCATCCCAGGGGTCTCGAACACGAGCC
GCAAGACCACCAAAAAGCAAGCCAAGAAAGGTAAAACCCCAGAGGAAGTGCTAAAGAAGTACCTGCAGAA
GGTCCGGCACCCACCAGAAGAGGATTGTACCATCTGTATGGAGCGTCTCACAGCCCCCTCTGGCTACAAA
GGCCCACAGCCTACAGTCAAGCCTGACCTGGTGGGAAAGCTGTCCAGGTGTGGCCACATCTACCACATCT
ACTGCCTGGTGGCTATGTACAACAATGGGAACAAGGATGGGAGTTTACAGTGCCCAACATGTAAGACCAT
TTATGGCGTCAAGACAGGCACCCAGCCTCCAGGGAAGATGGAATACCACCTCATCCCCCACTCCTTGCCT
GGCCATCCGGACTGCAAGACCATCCGGATCATCTACAGTATCCCCCCTGGCATTCAGGGACCAGAGCATC
CGAATCCTGGGAAGAGCTTCAGTGCCCGTGGCTTCCCACGACATTGTTACCTTCCAGACAGCGAGAAGGG
GAGAAAAGTTCTGAAGCTGCTTCTAGTGGCCTGGGACCGCCGTCTCATCTTTGCCATTGGAACCTCCAGC
ACCACGGGCGAGTCCGATACTGTCATCTGGAATGAGGTTCACCACAAAACAGAATTTGGCTCTAATCTCA
CTGGCCATGGCTACCCAGATGCCAATTACCTGGATAACGTGCTGGCTGAACTGGCTGCCCAGGGTATCTC
TGAAGACAGCACTTCCCATGAAAAGGACTGA

Translation (616 aa):
MLLASAVVVWEWLNEHGRWRPYSPAVSHHIEAVVRAGPRAGGSVVLGQVDSRLAPYIIDLQSMNQFRQDT
GTLRPVRRNYYDPSSAPGKGVVWEWENDNGSWTPYDMEVGITIQYAYEKQHPWIDLTSIGFSYIIDFSTM
GQINRQTQRQRRVRRRLDLIYPMVTGTMPKTQSWPVSPGPATSSPAPPCSCPQCVLVMSVKAAVVHGGTG
PPAVRKNMALSGVGKLPQPPGPGAKPLDTTGTIRGPGKTAPSQVIRRQVSNAPAGATVGSPASPQGSNRK
TGRVALATLNRSNLQRLAIAQSRVLIASGVPTVPVKNLNGSSPVNPALAGITGILMSAAGLPVCLTRPPK
LVLHPPPVSKSEIKSIPGVSNTSRKTTKKQAKKGKTPEEVLKKYLQKVRHPPEEDCTICMERLTAPSGYK
GPQPTVKPDLVGKLSRCGHIYHIYCLVAMYNNGNKDGSLQCPTCKTIYGVKTGTQPPGKMEYHLIPHSLP
GHPDCKTIRIIYSIPPGIQGPEHPNPGKSFSARGFPRHCYLPDSEKGRKVLKLLLVAWDRRLIFAIGTSS
TTGESDTVIWNEVHHKTEFGSNLTGHGYPDANYLDNVLAELAAQGISEDSTSHEKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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