NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20542.1 Public Mus musculus 6 Acrbp 23 108 98 CCDS HistoryNCBI Gene:54137Re-query CCDS DB by CCDS ID:20542.1Re-query CCDS DB by GeneID:54137See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20542.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088294.11 ENSMUSP00000085632.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088294.11Link to Ensembl Protein Viewer:ENSMUSP00000085632.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000088294Re-query CCDS DB by Protein ID:ENSMUSP00000085632
Original member Current member NCBI NM_016845.2 NP_058541.2 Accepted alive Link to Nucleotide Sequence:NM_016845.2Link to Protein Sequence:NP_058541.2Re-query CCDS DB by Nucleotide ID:NM_016845Re-query CCDS DB by Protein ID:NP_058541Link to BLAST:NP_058541.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058541.2 540 Q3V140-1 540 100% 0 0

Chromosomal Locations for CCDS 20542.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 125050010 125050052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125050434 125050649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125050847 125050941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125051243 125051360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125053490 125053952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125054673 125054805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125060810 125060989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125061086 125061253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125062436 125062519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 125062936 125063058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1623 nt):
ATGATGAATCTAGCTGCTGGCTTCCTTCTGATGCTTCTGGAAGTGCTGCTCCTGCCTGGAACACCTCTTT
CCGCTGAGGAATCTCCAGCCTCCACTCCAGGCAGCCCTCTCTCGTCCACTGAGTATGAACGCTTCTTCGC
CCTGCTGACCCCAACCTGGAAGGCAGAGACCACCTGCCGCCTCCGTGCCACCCACGGCTGCCGGAACCCC
ACTCTCGTTCAGTTGGATCAATATGAAAACCACGGATTGGTACCAGATGGTGCTGTCTGCTCCGATCTCC
CTTATGCTTCCTGGTTTGAGTCCTTCTGCCAGTTTGCTCAGTATCGTTGCTCCAACCATGTCTACTATGC
CAAGAGGGTCCGGTGCTCCCAGCCCGTCTCCATCCTATCCCCCAACACTCTCAAGGAGGTGGAGTCTTCA
GCAGAAGTTCCTCCCACTTCCATGACCACCCCCATTGTGTCCCATGCCACAGCCACAGAACACCAGGCCT
TCCAGCCTTGGCCTGAGCGGCTCAACAACAACGTGGAGGAGCTGCTGCAGTCATCCTTGTCCCTGGGAGG
CAAGGACCAACAGAGCAGTCGGAGACCAGGCCAGGAGCAGCGCAAGCAGGAGCAGATCCAAGAACATAAG
CTAGAAGAAGCGCAGGAGCAAGAAGAGCAGGAAGAAGAGGAAGAGGAGGAGGAAGCCAAGCAGGAAGAGG
GGCAGGGGACAGAGGCGGGTCTGGAGTCAGTGTCCAGGCTGCAGTCAGACTCAGAGCCCAAGTTTCAATC
CCAGTCACTGTCTTCCAACCCGTCCTTCTTCACTCCCCGGGTCCGAGAGGTGGAGTCTGCTCCATTGATG
ATGAAGAATATCCAGGAGCTCATTCGGTCTGCCCAGGAAATGGATGAAATGAATGAACTGTATGATGACT
CCTGGAGAAGCCAAAGCACTGGCAGCCTCCAGCAGCTGCCCCACATGGAGACCCTGATGGTGCTATGCTA
TTCCATTATGGAGAATACCTGCACCATGACTCCCACAGCCAAGGCCTGGAGCTACATGGAGGAGGAGATC
CTTGGCTTCGGGGATTCGGTGTGTGACAATCTCGGAAGGCGACACACAGCTGCCTGTCCCCTCTGTGCAT
TCTGCTCCCTGAAGCTGGAGCAGTGCCACAGTGAAGCCAGTGTGCTGCGCCAGAAGTGTGACGCTTCCCA
CAAGATACCCTTCATCAGCCCCTTGCTCTCAGCCCAGAGCATATCCACGGGCAACCAGGCGAGGATCCCA
GATAAAGGACGATTTGCTGGGCTAGAAATGTACGGAGGACTCAGCTCAGAGTTCTGGTGCAACCGGCTTG
CTATGAAGGGCTGTGAAGATGACCGAGTCTCCAACTGGCTCAAAGCTGAGTTCCTTAGCTTCCAGGAGGG
GGATTTCCCCACCAAGATTTGTGACACAAACTATATCCAGTACCCAAACTACTGTTCCTTCAAAAGCCAG
CAGTGCCTGCTGAGAAACCAGAACAGAAAGATGTCCCGCATGAGGTGTATGCTGAATGAGAGGTACAACG
TGCTAAGCCTGGCTAAGAGCGAAGAGGTGATCCTTCGATGGAGCCAAGAGTTTAGCACTTTGGCTATAGG
CCAGTTTGGATGA

Translation (540 aa):
MMNLAAGFLLMLLEVLLLPGTPLSAEESPASTPGSPLSSTEYERFFALLTPTWKAETTCRLRATHGCRNP
TLVQLDQYENHGLVPDGAVCSDLPYASWFESFCQFAQYRCSNHVYYAKRVRCSQPVSILSPNTLKEVESS
AEVPPTSMTTPIVSHATATEHQAFQPWPERLNNNVEELLQSSLSLGGKDQQSSRRPGQEQRKQEQIQEHK
LEEAQEQEEQEEEEEEEEAKQEEGQGTEAGLESVSRLQSDSEPKFQSQSLSSNPSFFTPRVREVESAPLM
MKNIQELIRSAQEMDEMNELYDDSWRSQSTGSLQQLPHMETLMVLCYSIMENTCTMTPTAKAWSYMEEEI
LGFGDSVCDNLGRRHTAACPLCAFCSLKLEQCHSEASVLRQKCDASHKIPFISPLLSAQSISTGNQARIP
DKGRFAGLEMYGGLSSEFWCNRLAMKGCEDDRVSNWLKAEFLSFQEGDFPTKICDTNYIQYPNYCSFKSQ
QCLLRNQNRKMSRMRCMLNERYNVLSLAKSEEVILRWSQEFSTLAIGQFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH