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Report for CCDS44366.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44366.1 Public Homo sapiens 10 OTUD1 24 110 108 CCDS HistoryNCBI Gene:220213Re-query CCDS DB by CCDS ID:44366.1Re-query CCDS DB by GeneID:220213See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44366.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376495.5 ENSP00000365678.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376495.5Link to Ensembl Protein Viewer:ENSP00000365678.3Re-query CCDS DB by Nucleotide ID:ENST00000376495Re-query CCDS DB by Protein ID:ENSP00000365678
Original member Current member NCBI NM_001145373.3 NP_001138845.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145373.3Link to Protein Sequence:NP_001138845.1Re-query CCDS DB by Nucleotide ID:NM_001145373Re-query CCDS DB by Protein ID:NP_001138845Link to BLAST:NP_001138845.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138845.1 481 Q5VV17 481 100% 0 0

Chromosomal Locations for CCDS 44366.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 23439458 23440903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1446 nt):
ATGCAGCTCTACAGCAGCGTCTGCACCCACTACCCCGCCGGGGCCCCGGGTCCCACGGCCGCCGCCCCCG
CGCCACCCGCCGCCGCTACCCCCTTCAAGGTCTCGCTGCAGCCCCCGGGAGCCGCCGGCGCCGCGCCCGA
GCCCGAGACCGGTGAGTGCCAGCCCGCCGCGGCCGCCGAGCACCGGGAAGCCGCCGCTGTCCCCGCCGCC
AAGATGCCCGCCTTCTCCTCCTGCTTCGAGGTGGTGTCCGGGGCCGCCGCGCCCGCCTCCGCCGCCGCCG
GCCCGCCCGGCGCGTCCTGCAAGCCGCCGCTGCCGCCGCACTACACGTCCACCGCACAGATCACCGTGCG
GGCCCTGGGCGCCGACAGGCTCCTGCTGCACGGGCCCGATCCCGTTCCCGGCGCCGCGGGCTCCGCCGCT
GCCCCGCGCGGCCGCTGCCTCCTGCTCGCCCCGGCGCCCGCAGCCCCGGTCCCGCCGCGGCGGGGCTCCT
CGGCCTGGCTCCTGGAGGAGCTGCTGCGGCCCGACTGCCCCGAGCCCGCGGGCTTGGACGCGACACGGGA
GGGGCCCGATCGGAACTTCCGACTGAGCGAGCACCGCCAGGCCCTGGCCGCCGCCAAGCACCGAGGCCCC
GCGGCGACCCCGGGGAGCCCCGATCCCGGCCCCGGTCCGTGGGGCGAAGAGCACTTGGCGGAGAGGGGCC
CCAGGGGCTGGGAGAGGGGCGGCGATCGCTGCGACGCGCCCGGTGGGGACGCGGCGCGGAGGCCCGACCC
AGAGGCCGAGGCACCCCCCGCCGGGAGCATCGAGGCCGCCCCGAGTAGTGCGGCGGAGCCGGTGATCGTC
TCCAGGTCGGATCCCAGAGACGAGAAGCTGGCCCTATACCTGGCCGAGGTGGAGAAGCAGGACAAGTATC
TGCGGCAGAGGAATAAGTACCGATTCCACATCATTCCAGACGGCAACTGCCTCTACCGAGCTGTCAGCAA
GACGGTGTATGGGGACCAGAGCCTGCACCGGGAGTTGAGGGAGCAGACGGTGCACTACATCGCCGACCAT
CTCGACCACTTCAGCCCCCTGATTGAGGGCGACGTGGGGGAGTTTATCATCGCTGCTGCCCAAGACGGGG
CATGGGCCGGGTACCCGGAGTTGCTGGCCATGGGGCAGATGCTGAATGTGAATATCCATTTAACTACTGG
AGGGAGGCTGGAGAGTCCCACGGTGTCTACCATGATTCATTATTTGGGCCCAGAGGATTCCCTGAGGCCT
AGTATTTGGCTCAGTTGGCTCAGTAACGGACACTATGATGCTGTATTTGATCACTCCTATCCTAACCCAG
AGTACGACAACTGGTGCAAACAAACTCAAGTGCAAAGGAAACGCGACGAAGAACTTGCCAAATCTATGGC
CATATCCTTGTCTAAAATGTATATTGAACAAAATGCATGCTCTTGA

Translation (481 aa):
MQLYSSVCTHYPAGAPGPTAAAPAPPAAATPFKVSLQPPGAAGAAPEPETGECQPAAAAEHREAAAVPAA
KMPAFSSCFEVVSGAAAPASAAAGPPGASCKPPLPPHYTSTAQITVRALGADRLLLHGPDPVPGAAGSAA
APRGRCLLLAPAPAAPVPPRRGSSAWLLEELLRPDCPEPAGLDATREGPDRNFRLSEHRQALAAAKHRGP
AATPGSPDPGPGPWGEEHLAERGPRGWERGGDRCDAPGGDAARRPDPEAEAPPAGSIEAAPSSAAEPVIV
SRSDPRDEKLALYLAEVEKQDKYLRQRNKYRFHIIPDGNCLYRAVSKTVYGDQSLHRELREQTVHYIADH
LDHFSPLIEGDVGEFIIAAAQDGAWAGYPELLAMGQMLNVNIHLTTGGRLESPTVSTMIHYLGPEDSLRP
SIWLSWLSNGHYDAVFDHSYPNPEYDNWCKQTQVQRKRDEELAKSMAISLSKMYIEQNACS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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