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Report for CCDS88387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88387.1 Public Mus musculus 12 Ttc7b 23 108 98 CCDS HistoryNCBI Gene:104718Re-query CCDS DB by CCDS ID:88387.1Re-query CCDS DB by GeneID:104718See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88387.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000223020.1 ENSMUSP00000152299.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223020.1Link to Ensembl Protein Viewer:ENSMUSP00000152299.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223020Re-query CCDS DB by Protein ID:ENSMUSP00000152299
Current member NCBI NM_001374711.1 NP_001361640.1 Accepted alive Link to Nucleotide Sequence:NM_001374711.1Link to Protein Sequence:NP_001361640.1Re-query CCDS DB by Nucleotide ID:NM_001374711Re-query CCDS DB by Protein ID:NP_001361640Link to BLAST:NP_001361640.1

Chromosomal Locations for CCDS 88387.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 100301549 100301770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100325544 100325746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100332579 100332719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100340497 100340547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100347936 100348033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100355003 100355119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100373544 100373704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100376176 100376248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100382121 100382178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100384147 100384264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100385856 100385960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100387111 100387194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100403357 100403494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100407000 100407063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100415135 100415307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100419492 100419570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100446860 100446981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100466180 100466310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100495272 100495440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100500076 100500230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100520571 100520691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2583 nt):
ATGGCGACCAGGAAGGCGGGCTCGCGGCTGGAGACGGAGATCGAGCGCTGCCGCTCCGAGTGCCAATGGG
AGCGGATCCCCGAGCTCGTCAAGCAGCTGTCGGCCAAGCTCATCGCCAACGATGATATGGCTGAACTTCT
CCTTGGGGAGTCGAAACTGGAACAGCACTTGAAGGAGAAGCCCCTGCGGCAGGGAGCCAGTCCCCGGGGC
CCCAGACCCCAGCTGACTGAAGTGCGCAAGCATCTGACCGCTGCCCTGGACCGAGGGAACCTCAAGTCAG
AATTCCTACAAGAATCCAATCTGGTCATGGCCAAACTGACTTACGTGGAAGGAGATTATAAGGAAGCCCT
GAACATCTACGCCCGGGTGGGCCTCGATGACTTGCCGCTGACAGCCGTGCCTCCCTACAGGTTGCGAATG
ATTGCTGAAGCCTATGCAACCAAAGGACTTTGTTTAGAGAAACTGCCTGTTTCGTCCTCTACCAGTAATC
TCCATGTGGACCGGGAGCAGGACGTCATCACCTGCTATGAGAAAGCTGGGGACATTGCACTCTTGTACCT
CCAGGAGATAGAAAGGGTAATGCTAACTAATATTCAGAACAGAAGCCCTAAGCCTGGCCCTGCTCCCCAC
GATCAAGAACTAGGTTTTTTCCTAGAAACAGGACTTCAGAGAGCCCATGTCCTCTATTTCAAAAATGGGA
ACTTGACGAGAGGAGTCGGGAGATTTAGGGAGCTTCTCAGAGCCGTGGAGACAAGAACAACACAAAACCT
ACGCATGACGATAGCCAGGCAGTTGGCAGAAATCTTGTTACGGGGCATGTGTGAGCAGAGCTACTGGAGC
CCTCTGGAGGAGCCTCCCTACCAGTCACCTCTGGATGACCCTCTCCGGAAAGGAGCAAACACGAAGGCCT
ACACACTCCCTCGCAGAGCCCGTGTCTACTCAGGAGAGAACATTTTTTGTCCTCAAGAAAATACTGAAGA
GGCGTTGCTGTTACTGCTCATTAGTGAATCTATGGCCAACAGAGATGCTGTGCTGAGCAGAATTCCGGAA
CACAAGAGTGACCGCCTCATCAGTCTGCAAAGCGCGTCTGTGGTCTATGATCTACTGACCATTGCCCTTG
GAAGACGAGGCCAGTATGAGATGCTGTCAGAGTGCTTAGAAAGAGCCATGAAGTTTGCCTTCGAAGAGTT
CCACCTCTGGTACCAGTTTGCTCTGTCGCTGATGGCTGCTGGGAAGTCCGCCCGTGCTGTGAAGGTGCTG
AAGGAATGCATCCGGCTAAAGCCGGACGACGCCACCATCCCGCTCTTGGCAGCCAAGCTCTGTGTGGGTT
CCCTCCACTGGTTGGAAGAGGCTGAGAAGTTTGCCAAAACTGTTGTTGATGTGGGAGAGAAAACATCAGA
ATTCAAGGCCAAAGGCTACCTAGCTCTGGGGCTCACGTATAGTCTGCAAGCCACTGATGCTTCTCTGCGA
GGGATGCAGGAGGGCCTGCAGAGGAAGGCACTTCTTGCGTTTCAGAGGGCCCATAGCCTGTCACCTACAG
ATCACCAAGCAGCTTTCTACCTGGCTCTGCAGCTCGCCATCTCCAGACAGATACCAGAAGCTCTAGGATA
TGTTCGCCAAGCTCTCCAACTGCAAGGCGACGATGCGAACTCCCTGCACCTCCTGGCTCTCTTGTTGTCG
GCTCAGAAGCATTACCATGATGCTCTCAACATCATCGACATGGCCCTGAGTGAATACCCAGAAAATTTTA
TACTACTGTTTTCCAAAGTGAAGTTGGAGTCACTCTGCCGGGGCCCGGATGAGGCGCTGCTCACCTGTAA
GCACATGCTACAGATATGGAAATCCTGCTACAACCTTACCAATCCCAGTGACTCTGGACGTGGGAGCAGC
CTCTTAGACAGAACCATCGCTGACAGACGACAGCTTAATACAATCACTTTGCCAGACTTCAGCGATCCTG
AGACAGGCAACTCTCCAGAAGCACACTTTCATGGTTTTCCCTCCCTCTTTTCAGTTAGCTCCGTCCATGC
CACATCAGTAGCAGCCTCAAGAGTGGAGCAAGCACTGTCAGAAGTGGCCTCATCTCTGCAAAGCAGTGCT
CCCAAGCAGGGTCCACTGCATCCCTGGATGACGCTGGCACAGATCTGGCTCCATGCAGCTGAGGTCTACA
TTGGCATTGGAAAGCCTGCGGAAGCTACAGCCTGTACCCAAGAAGCTGCCAACCTCTTCCCAATGTCCCA
TAATGTCCTCTACATGCGGGGCCAGGTTGCTGAGCTTCGAGGACACTTCGATGAGGCCCGGCGGTGGTAC
GAAGAAGCCTTATCCATCAGCCCTACTCATGTGAAGAGCATGCAGCGACTGGCTCTGGTCCTTCACCAGC
TGGGCCGCTACAGTCTAGCTGAGAAGATTCTCCGGGATGCAGTGCAGGTGAATTCGACAGCCCACGAGGT
CTGGAACGGGCTGGGCGAGGTCCTCCAAGCTCAGGGTAACGACGCAGCAGCCACCGAGTGCTTCCTGACA
GCCTTGGAACTGGAGGCCAGCAGCCCTGCTGTACCCTTCACTGTCATCCCCCGTGTGCTCTGA

Translation (860 aa):
MATRKAGSRLETEIERCRSECQWERIPELVKQLSAKLIANDDMAELLLGESKLEQHLKEKPLRQGASPRG
PRPQLTEVRKHLTAALDRGNLKSEFLQESNLVMAKLTYVEGDYKEALNIYARVGLDDLPLTAVPPYRLRM
IAEAYATKGLCLEKLPVSSSTSNLHVDREQDVITCYEKAGDIALLYLQEIERVMLTNIQNRSPKPGPAPH
DQELGFFLETGLQRAHVLYFKNGNLTRGVGRFRELLRAVETRTTQNLRMTIARQLAEILLRGMCEQSYWS
PLEEPPYQSPLDDPLRKGANTKAYTLPRRARVYSGENIFCPQENTEEALLLLLISESMANRDAVLSRIPE
HKSDRLISLQSASVVYDLLTIALGRRGQYEMLSECLERAMKFAFEEFHLWYQFALSLMAAGKSARAVKVL
KECIRLKPDDATIPLLAAKLCVGSLHWLEEAEKFAKTVVDVGEKTSEFKAKGYLALGLTYSLQATDASLR
GMQEGLQRKALLAFQRAHSLSPTDHQAAFYLALQLAISRQIPEALGYVRQALQLQGDDANSLHLLALLLS
AQKHYHDALNIIDMALSEYPENFILLFSKVKLESLCRGPDEALLTCKHMLQIWKSCYNLTNPSDSGRGSS
LLDRTIADRRQLNTITLPDFSDPETGNSPEAHFHGFPSLFSVSSVHATSVAASRVEQALSEVASSLQSSA
PKQGPLHPWMTLAQIWLHAAEVYIGIGKPAEATACTQEAANLFPMSHNVLYMRGQVAELRGHFDEARRWY
EEALSISPTHVKSMQRLALVLHQLGRYSLAEKILRDAVQVNSTAHEVWNGLGEVLQAQGNDAAATECFLT
ALELEASSPAVPFTVIPRVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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